Tympanuchus pallidicinctus (lesser prairie-chicken): 128086302
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Entry
128086302 CDS
T08967
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpai03000
]
128086302 (SOX6)
Transcription factors [BR:
tpai03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128086302 (SOX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
128086302
NCBI-ProteinID:
XP_052550696
LinkDB
All DBs
Position
Unknown
AA seq
817 aa
AA seq
DB search
MPSNSEVLAGVVGESRTEEWMNSHYIRMSSKQATSPFACAADGEETMTQDLASRDKEEGN
SDQHATSHLPLHNVMHNKPHSEELPTLVTTIQQDAEWDGVISAQHRMESESNKLCSLYSF
RNTSTSPHKPDEGSRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSS
CMEKLLSKDWKEKMEKLNTSDLLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDE
QKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIP
IFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYA
AQLASMQVSPGAKMPSTPQPPNTAGALSPTGMKNEKRGTSPVTQVKDEAAQPLNLSARPK
TAEPVKSPTSPTQNLFPASKSSPVTVTNKSGIPSPLGGSLGRGSSLDILSSLNSPALFGD
QDTVMKAIQEARKMREQIQREQQQQQQPHGVDGKLPSMNNMGLNNCRNEKERTRFENLGP
QLTGKPNEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDS
RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYY
EEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQP
QIPITTGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSIPVIQSTYGMKTDSGSLAG
NEMINGEDEIEMYEDYEDDPKSDYSSENEAHEAVSAN
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaactctgaagtgctggctggtgtggtaggagaaagcaggacagaagagtgg
atgaacagccattatataagaatgtcttccaagcaggctacctctccatttgcatgtgca
gctgatggagaggaaacaatgacccaggacttagcatcacgagacaaggaagagggcaac
agtgatcagcacgcgacctctcatctgcctctacataatgtaatgcacaacaaacctcac
tctgaggagctaccaactctagtcacgaccatccaacaagatgccgagtgggatggagtc
atctcagcccaacacagaatggaatcggagagtaataagttatgttccctatattccttc
cgaaatacctctacctcaccacacaagcctgacgaaggaagtcgtgaccggagtgagcta
atgaccagtgttaattttggaacgccagaacgccgcaaaggaagccttgcagatgtggtg
gacacactgaagcagaagaaactagaagaaatgaccaggactgagcaagaagattcatcc
tgcatggaaaaactactctctaaagactggaaagagaagatggaaaaattaaacacaagt
gatctccttggagaaattaaaggtacaccagaaagcctggcagaaaaagagcgacagctc
tcaaccatgatcacccagctgatcagcttacgggagcagctcctggctgcccatgatgaa
cagaaaaagctggcagcctcacaaattgaaaaacaacgacagcaaatggatcttgctcgc
caacagcaagaacagattgcaagacaacagcagcaacttctgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagcggacactggcagcggctgctgcagcccagcagggattcctc
ttccccccaggaataacttacaagccaggtgataactaccctgtgcagttcattccatca
acaatggcagctgctgctgcttctggactcagccctttacagctccagcaactgtatgca
gctcagctggcaagcatgcaagtttctcctggagccaaaatgccatctactccacagcca
ccaaatacagcaggggcactctcacccactgggatgaaaaatgagaagagagggaccagc
ccggtaactcaagttaaggatgaagcagcccagccactgaatctttcagccagacccaag
acggctgaaccagtcaaatccccaacatctccaacacagaacctcttcccagctagcaaa
agcagtccagtgacagtgacaaacaagagtggtatccccagccctcttggtggatctctg
ggaagaggatcctccttagatattctttccagtcttaattcacctgccctgtttggggac
caggacacagtaatgaaagccattcaggaggctcggaaaatgagagagcagatccaaagg
gagcagcagcagcaacagcagccacatggtgttgatggaaaattgccctccatgaataac
atgggtctaaacaactgcaggaatgaaaaggaaagaacaagatttgagaatttaggccca
cagttaacagggaagcccaatgaagatggaaaactgggccctggtgtcattgatcttaca
aggccagaagatgcagaaggaagtaaagcaatgaatggctctgcagctaaactacagcag
tattattgttggccaacaggaggtgccactgtggctgaagctcgagtctaccgggattcg
cgaggtcgagccagtagtgaaccacacatcaaacgaccaatgaatgctttcatggtttgg
gcaaaggatgagcgccgaaaaattctccaagcttttcctgacatgcacaactccaacatt
agcaaaatcctaggatctcgctggaagtctatgtcaaatcaagaaaaacaaccttattat
gaagagcaggcacggctaagtaaaatccacctagaaaagtatcctaattacaaatacaaa
cctcgaccaaaacgtacctgcattgttgatggaaagaaattgcgtattggtgaatacaaa
caactgatgaggtctcgaagacaggagatgaggcagttttttactgtaggacaacagcct
caaattccaatcaccacaggaacgggggttgtctatcctggtgctattaccatggcaact
accacgccgtcacctcagatgacatcggattgctcaagcacctccgccagtcctgagccc
agcatccccgtcattcagagcacttacgggatgaagacagacagcggaagccttgctgga
aacgaaatgataaatggagaggatgaaattgaaatgtatgaggactatgaggatgatccg
aaatcagactatagtagtgaaaacgaagcccatgaggcagtcagtgccaactga
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