Tympanuchus pallidicinctus (lesser prairie-chicken): 128086476
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Entry
128086476 CDS
T08967
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128086476 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128086476 (PATL1)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128086476 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
128086476 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
128086476
NCBI-ProteinID:
XP_052551124
LinkDB
All DBs
Position
Unknown
AA seq
754 aa
AA seq
DB search
MFRYPSLEECPLDEEDDGFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEEKP
LGSGQQTAPSSEDAELLGEPEDALAERLTRLVIESELEDPAIMRAVHTRGPGAQTMALNT
SIWDGPSVLQRICTPLLTQEMPSVSVLDYALPQRPLQAQEEERDPSERALPRRSSSPIIG
SPPVRAVPIGTPPKQVAMPNFNQQILCPKPVHIRATMQQRYSAPYSERMSPNQLCNVPNS
SLLGHPFPTSVSPVFTHLQRAQLLGGAQAGRISPSQFARVSGLVGNPLPSVNPKLLQGRM
GQMMAPTGGFRAFFGAGPAPPSQPQPAPGPVPHLQGLRPQPFRPDTTHLHPQHRRLLHQR
QQQNRNQHRGLNGSMGERGGHRGSHQEQARKDPYANLMLQREKDWVSKIQMMQLQSTDPY
LDDYYYQNYFQKLEKLSAAEEDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSV
NNPRKMIDAVVTSRGEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSLEGE
RPALIGERKQKICNMYDNLRGKAPGQERLSDDHFMQIMCIRKGKRLVARILPFLSPEQAA
DVLLATARNLPFLIKKDAQDEVLPCLLRPFSHLLYQLPLGTVTSLVQQLTNLPQSAAAPT
STNLHLTTVLQNKFGLSLLYLALSRGEELQSTDGGTELMQDNQWTELMLLATQELLRVPP
TALPKPVPPPSNLLSFFSRYVDQQKLNLLQTKLQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggagtgcccgctggatgaggaggacgacggcttccag
gcactgggcgaggaggatgaggacattgatcagttcaacgatgacacctttggagctggg
gctgtcgatgatgactggcaggaggcccacgagcgattggctgagctggaggagaaaccc
ttgggctctgggcagcagaccgcgccgagcagtgaagatgcagagttgctgggtgaacct
gaggatgcactggcagagcggctgacgcggctggtgatcgagagtgagctggaggaccct
gccatcatgcgagctgtgcacacccgtgggcctggtgcacaaactatggcactcaacacc
agcatctgggatggcccctctgtgctgcagcgcatctgcacgccgctgctcacccaggag
atgccatcagtgtccgtgctggactatgctctgccccagagacccctgcaggctcaggag
gaggagcgggacccctcggagcgggcactgccacgtcgctcatcctctcccatcattggg
agcccccctgtacgagcagtccccatcggtacccctcccaagcaggtcgctatgcccaat
tttaaccagcagatcctgtgtccaaagcctgtccacatcagggctaccatgcagcagcgc
tactctgctccctacagcgagaggatgtcccccaaccagctctgcaacgtaccaaactct
tcgttgctgggccacccattccccaccagtgtctctcccgttttcacccacctgcagcgg
gcgcagctgctgggaggagcgcaggccggccgaatttctcccagccagtttgctcgagtc
tcaggcctcgttgggaacccactaccctccgtcaatcccaagctgctgcagggcagaatg
gggcagatgatggctcccactggcggcttccgtgccttctttggggctggccccgctccg
ccctcacagccgcagcctgcgccgggccccgtgcctcacctgcagggcctgaggccacag
cccttccgaccggacaccacccacctgcacccccagcatcgccggctcctgcaccagcgg
cagcagcagaaccgaaaccagcaccgtggcctcaacggctcgatgggggaacgagggggc
caccgtggcagccaccaggagcaggcacgtaaggacccctacgcaaacctcatgctgcag
cgggagaaggactgggtgtccaagatccagatgatgcagctgcagagcaccgatccctac
ttggatgactactactatcagaactacttccagaagctggagaagctgtcagcagctgag
gaagacggtcccaagaaggagcgtacgaaactcatcacccctcaggtggcaaagctggag
cacacctacaagccagtgcagtttgagggctcgcttgggaagctgacagtctcaagtgtg
aataacccccggaagatgatcgatgcggtggtgacctcccgtggagaggatgatgagaca
aaggagaagcaggtccgggacaagcggcgccagacacttgtcaccattgagaagacgtac
agcctcctcctggatgtggaggactacgagagacgctacctcctgagcttggagggtgag
cggcccgccctgataggtgagaggaagcagaagatctgcaacatgtatgacaatctgcgt
gggaaagcaccggggcaggaaaggctgagcgacgaccacttcatgcagatcatgtgcatc
cggaaaggaaagcgcctggtggcccgcatcctccccttcctgtcccctgagcaagcggcc
gacgtgctgttggcgacggcccggaacctgcccttcctcatcaagaaggatgctcaggat
gaggtgctgccctgcctgctgcggcccttttcacacctcctataccagctccccctaggg
acagtcactagcctggtgcagcagctcaccaacctacctcagagtgctgccgcacccacc
tccaccaacttgcacctcaccacagtgctccagaacaagttcggcctgtccctgctgtac
ctggctctgagccgtggggaggagctgcagagcacggacggcggcacggagctgatgcag
gacaaccagtggacggagctgatgctgctggccactcaagagctgctgcgtgtaccaccc
actgccctgcccaagccggtgccccccccctccaacctgctctctttcttctcccgctac
gtcgaccaacagaagctcaacctcctgcagaccaagctgcagtga
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