Tympanuchus pallidicinctus (lesser prairie-chicken): 128086645
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Entry
128086645 CDS
T08967
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
128086645 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpai04121
]
128086645 (RAG1)
Enzymes [BR:
tpai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128086645 (RAG1)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128086645 (RAG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
Fusion_F0
Motif
Other DBs
NCBI-GeneID:
128086645
NCBI-ProteinID:
XP_052551428
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MSITSQMDLPEEIQHPYAKFSEWKFKLFKVRPFQKAPSDKSQCINKDQEQEVASTDKNIV
LPKDEEVPRGEKLILTQVDFMGNMQALEKDVNDMKIQDNTIHQNNLKQLCRICGASFKTD
CYKRTHPVHGPVDDETLWLLRKKEKKATSWPDLIAKVFKIDVRGDVDTIHPTRFCHNCWS
IIHRKFSNTPCEVYFPRNSTMEWQPHSTNCEVCHTPSRGVKRKSQPSNVIHGKRVKIIAE
HARVNRGIKNQVLINNKKVMKEITNCKNRHLSTKLLAVDYPADFIKSISCQICEHILADP
VETTCRHLFCRACILSCIKVMGSYCPSCWYPCFPTDLVTPVKSFLNILDSLSIRCPVPEC
DEEILHGKYGQHFSNHKEMKDKELYNPINKGGRPRQHLLSLTRRAQKHRLRELKRQVKAF
AEKEEGGDIKAVCMTLFLLALRAKNEHKQADELEAIMQGKGSGLHPAVCLAIRINTFLSC
SQYHKMYRTVKAVTGRQIFQPLHALRTAEKALLPGYHPFEWKPPLKNVSTNTEVGIIDGL
SGLPLSIDDYPIDTIAKRFRYDTALVSALKDMEEEILEGMKAKNLDDYLNGPFTVVVKEC
CDGMGDVSEKHGSGPAVPEKAVRFSFTVMNIAIDHGNEKIRIFEEVKPNSELCCKPLCLM
LADESDHETLTAILSPLIAEREAMKNSELLLEMGGILRTFKFIFRGTGYDEKLVREVEGL
EASGSTYICTLCDATRLEASQNLVFHSITRSHAENLERYEIWRSNPYHESVDELRDRVKG
VSAKPFIETVPSIDALHCDIGNATEFYRIFQMEIGEVYKNPDASKEERKRWQLTLDKHLR
KKMKLKPMMRMSGNFARKLMSKETVEAVCELIKCEERHEALKELMDLYLKMKPVWRSSCP
AKECPELLCQYSYNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWAS
EGNESGNKLFRRFRKMNARQSKFYEMEDVLKHHWLYTSKYLQKFMNAHKTLRSQGFVIDP
DDGLGDSLPPEISLESSDSVEL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataacatcacaaatggatctacctgaagagattcagcatccatatgcaaaattt
tctgaatggaaattcaagctgtttaaagtgagaccatttcaaaaagcaccttctgataaa
agccaatgcataaacaaggatcaagaacaagaggtagcttctacggacaaaaacatcgtg
ctgcctaaagatgaagaagttccaagaggagaaaagttaattctgacacaggtggacttc
atgggcaacatgcaagcacttgagaaagatgtcaatgacatgaaaatacaagacaacaca
attcaccagaacaacctgaagcaactttgccgcatctgtggagcttcatttaaaactgat
tgctacaagagaactcatccagtacatggaccagtagatgatgaaactctgtggcttctg
agaaagaaagagaaaaaagcaacctcttggccagatcttattgcaaaagttttcaagatt
gatgtgagaggggatgttgacactatccatcccactcggttttgtcacaactgctggagt
attatccacaggaaattcagtaatactccatgtgaagtttattttcctaggaacagcacg
atggagtggcagccccactctacaaactgtgaagtgtgccacactcccagccggggagtc
aagagaaaaagccaaccatccaatgtaatacatggcaaacgtgtgaaaatcattgcagaa
catgctcgagttaacagaggcataaagaatcaagtgctgataaataacaaaaaggtaatg
aaagagattaccaactgcaagaacagacatctcagcaccaaacttcttgcagttgattat
ccagcagatttcattaaatccatctcttgccagatctgtgagcatattttggcagaccca
gtggaaacaacatgtagacacttgttttgcagagcttgtattctcagctgcatcaaagtt
atgggcagctattgcccctcctgctggtatccttgtttccctactgatctggtaacccca
gtgaaatccttcctgaacatccttgatagcctgagcataagatgccctgtaccagaatgt
gatgaagagatcttgcatggaaaatatggccaacacttctctaaccacaaggagatgaaa
gataaagagctctataaccccataaataaaggtggtcgaccaaggcagcatcttctgtct
ttgaccaggagagctcaaaaacatcgtctgagagaactgaaacgtcaagtgaaggctttt
gctgagaaagaagaaggtggtgatataaaggctgtatgcatgactttgttcctgctagct
ttaagagcaaaaaatgagcacaagcaagcagatgaattggaggctataatgcaaggcaaa
ggatctggacttcatcctgctgtttgcctggcaatccgaatcaacacatttctcagctgt
agccaatatcacaaaatgtaccgaactgtaaaagctgtcactgggaggcagattttccag
ccactgcatgctcttcgcactgccgagaaagccctcttaccaggttatcatccttttgaa
tggaagcctccattgaaaaatgtatccactaacacagaagtgggaattatagatggacta
tcaggactacccctctcgattgatgactacccaatagacacaattgcaaagagatttcga
tatgatacagccttggtttctgctttaaaggacatggaggaagaaatcttggagggcatg
aaggcaaaaaatctggatgactatctgaatggtcccttcactgtggtagtaaaagagtgc
tgtgacggaatgggagatgtcagcgagaagcatggaagtggtcctgctgtcccagagaag
gctgtacgcttttcatttacagtcatgaacattgctatagaccatgggaatgaaaagata
aggatctttgaagaagtaaagcccaattcagagttgtgttgcaaacccttgtgccttatg
ctggctgatgaatcagaccatgaaactctgacagcgatcctgagccctctcatagcagaa
agagaggctatgaagaacagtgaactgcttcttgaaatgggaggcatcctgagaacattc
aaattcatctttcgaggtacaggctatgatgagaaacttgtaagggaagtggaagggctg
gaggcctcaggttccacttatatctgtaccctctgtgatgcaacccgcctagaggcctct
cagaatttggtcttccactccatcaccaggagccacgctgaaaatctggagcgatatgaa
atatggaggtccaacccatatcacgaatctgttgatgagctccgtgacagagtgaagggt
gtttcagccaaaccttttatagagactgttccctccattgatgcgttgcactgtgacatt
ggcaacgcaacagaattttacagaattttccagatggagattggtgaagtctacaagaat
cctgatgcatctaaagaggaaaggaagaggtggcagttgactcttgacaaacatctcagg
aagaagatgaaattaaaacctatgatgaggatgagtgggaactttgctaggaagctcatg
tccaaagaaacagtagaggcagtatgtgaattaataaagtgtgaggaaaggcatgaagcc
ctaaaagaactaatggacctttatctgaaaatgaaaccagtatggcgatcttcgtgccct
gccaaagagtgtccagaattgctgtgccagtacagctacaattcacagcgttttgctgag
ctcctgtctacaaagttcaaatacagatatgagggcaagattaccaattattttcacaaa
acccttgctcatgtacctgaaatcattgaaagagatgggtccattggtgcttgggcaagt
gaaggaaatgagtctggaaacaaactatttaggaggttccgaaaaatgaatgccaggcag
tccaaattctatgaaatggaggatgtcttaaagcatcactggctatatacttctaagtac
ctccagaagttcatgaatgctcataaaacgttaagaagtcagggcttcgtgattgatcca
gatgatgggttaggtgattctttgccaccggagatctctttggaaagcagtgattcagtg
gaactctaa
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