Tympanuchus pallidicinctus (lesser prairie-chicken): 128086987
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Entry
128086987 CDS
T08967
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04137
Mitophagy - animal
tpai04140
Autophagy - animal
tpai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128086987 (HIF1A)
04137 Mitophagy - animal
128086987 (HIF1A)
04148 Efferocytosis
128086987 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpai03000
]
128086987 (HIF1A)
Transcription factors [BR:
tpai03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
128086987 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
128086987
NCBI-ProteinID:
XP_052552058
LinkDB
All DBs
Position
Unknown
AA seq
808 aa
AA seq
DB search
MDSPGGVTDKKRISSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFDLTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCNNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVESPEMKIFSKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTIISLDFSSNESDEQQC
DEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALNREVVSKLEPNTETL
ELSFTMPQVQEQPTSPSDASTSQSSPEPSSPNDYCFDVDNDMANEFKLELVEKLFAIDTE
AKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSGSQNAATITILQQTQTP
STAADEIKPVAERVDDVKALMVPSSPVHVINDTSSAPASPYSGNRSRTASPIRAGKGTLE
QTEKSCPGAPSLITVTLNKRSTAMDEELNPKMLALHNAQRKRKMEHDGSLFQAVGIGSLF
QQTGDRGGNASLAWKRVKACKSNGHNGVEQKTIILLSTDIASKLLGQSMDESGLPQLTSY
DCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggacagcccgggcggcgtcaccgacaagaagaggattagttctgaacgcaggaaagag
aagtcaagagatgcagctagatgccgaagaagcaaggaatcagaagtgttctatgaactt
gctcatcagctgccccttccgcacactgtgagtgcccacctcgacaaggcctccattatg
aggctgaccatcagctacctgcgcatgaggaagctgctggatgctggtgagctagagaca
gaagccaaaatggagaaggaactgaactgtttctacttaaaagctcttgatggatttgtt
atggtgctttctgaggatggggacatgatttacatgtctgaaaacgtgaacaagtgtatg
ggactcactcagttcgatttgacgggacacagtgtatttgatttcactcatccatgtgac
catgaagagctgagagaaatgcttacacacagaaatggtcctgtgaaaaagggcaaagag
caaaacacggagcgcagcttctttctcagaatgaagtgtacactgaccagcaggggaaga
acagtgaatataaagtctgctacgtggaaggtactgcactgcactggacacatacgtgta
tatgacacgtgcaataatcaaactcactgtggctacaagaagcctcccatgacgtgcttg
gtgctgatatgtgaacccattcctcacccatccaacattgaggtccccttggacagtaaa
acgttcctcagtcgtcacagtctcgatatgaaattctcctattgtgatgaaagaattaca
gagctgatgggatacgagccagaggaactcctgggtcgttcaatctatgagtactatcac
gcgctggattctgatcatctgaccaaaacacaccatgatatgttcacaaaagggcaggtg
acaacgggacaatacagaatgcttgctaagcaaggtggctacgtctgggttgaaactcaa
gcaactgttatatacaacactaagaattctcagccacagtgcatagtatgtgtaaactat
gtgttgagtggaattgttcagaaggacttgatattttcccttggacaaactgagtgtatg
ctgaaaccagtggagtctcctgaaatgaaaatattcagcaaagatgacctggatgatacc
aacagcctttttgaaaaacttaagcaggaaccagatgctttaactgtgctggctccagct
gctggagacacaattatctccctagatttcagcagcaatgagtctgatgaacaacaatgt
gatgaagttcctttgtataacgatgtaatgctcccctcatccagtgagaaattgcagaat
ataaatatggcaatgtccccactgcctgcctctgaaactacaaagccacttcgtagcaat
gctgatcctgcactcaatagagaagttgtatcaaagctggagccaaacacagagacactc
gaactttcttttaccatgcctcaggtgcaagagcaaccaaccagcccttctgatgcaagt
accagccaaagttcacctgagcccagtagtcccaatgactattgctttgatgtggataat
gacatggctaatgaattcaaactggaattagtggagaagctctttgcaatagatacagaa
gcaaaaaatccattctccactcaggagactgatttagacttggaaatgttggctccttac
atcccaatggatgatgacttccagctacgctcctttgatcagctatctccactggaaagc
agttcttctggctctcaaaatgcagccaccattaccatacttcagcagactcagacacca
tcaactgctgctgatgaaataaaaccagtggcagaacgtgtggatgatgtgaaagcacta
atggttccatcatctcctgtccacgtaataaacgacacgagtagtgccccagcatcacct
tacagtgggaacaggagtcgaactgcatctccaatcagagcaggaaaaggaacattggaa
cagacagaaaaatcttgtccaggagcacccagtttgataacagtcacgctgaacaaaaga
tctactgcaatggatgaagaactaaatccaaagatgctagctttgcataatgctcagaga
aaacgaaaaatggaacatgatggttcactttttcaggcagttggaattgggtctttattc
cagcagacaggtgaccgtggaggaaacgcatcgctggcctggaaacgcgtaaaggcgtgc
aaaagcaacgggcacaacggagtggagcaaaagacaatcattctactatcgactgacata
gcgagtaaacttctagggcagtcgatggatgagagtggactaccccaactcacgagttac
gattgtgaagtaaatgctcccatacaaggcaacagaaacctgctacagggtgaagaactg
ctcagagctctggatcaagttaactga
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