Tympanuchus pallidicinctus (lesser prairie-chicken): 128087027
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Entry
128087027 CDS
T08967
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04520
Adherens junction
tpai04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
128087027 (AFDN)
04530 Tight junction
128087027 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_3
RA_2
PDZ_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
128087027
NCBI-ProteinID:
XP_052552152
LinkDB
All DBs
Position
Unknown
AA seq
1925 aa
AA seq
DB search
MSGGGSREEERRKLADIINHWNANRLDLFEISAPTEDLEFHGVMRFYFQDKAAGNFATKC
IRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDVDEKPLVVQLNWN
KDDREGRFVLKNENDTVPPKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKRREKEALR
QASDKDDRLLHGDDIENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFR
SSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVIEALEKYGLEKENPKDYCIA
RVILPPGAQHSDDKGAKETILDDDECPLQIFREWPSDKGILVFQLKRRPPDYVPKKSKKI
ADGKPLKGKERVDGSGYGSCLPPEKLPYLVELSPGRRNHFAYYNYHAYEDGSDSRDKPKL
YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRNIDAETYVEGQRIS
ETTMLQSGMKVQFGSSHVFKFVDPTQDHIIPKRPIDASLMVKGPRHKAGAVQETTFDLEG
DVHSGTALPASKSTSRLDGDRTSSASSTAERGMVKPMIRIEQQQDYRRQESRSQDTHGPE
LILPASIEFRESSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTCRYVLSSQYRPDITPTE
RTHKVIAIVNKMVNMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFVKQDRDLSRI
TVDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENNPQRPKIDDVLHTLTGAMS
LLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTAPDSGLCSHYWGAIVRQQLGHIEAWAE
KQGLELAADCHLSRIVQATTLLTMDKYSHADVPNINSTCFKLNSLQLQALLQNYHCAPDE
PLIPTELIENVVTVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNVPSG
LQEFLDPLCQRGFCRLIPHTRSPGTWTIYFEGADYESHLSHENAELAQPLRKEPEIITVT
LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ
ERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQRVSDRRGSGKPRPKSEGFEL
YNNSTQNGSPESPQLPWTEYSEPKKLPGDDRLMKNRADHRSSPNVANQPPSPGGKNAYAS
GTTTKITSVSTGNLCTEEQTLPPRPEAYPIPTQTYTREYFTFPASKSQDRMGPTQSQWPN
YEEKPQIQAESNHSINTTMQRVARSQEELRDKVFQPERNRLEVVIRKDIEFIDRKSDSDQ
WMNSSVDSSTSSQEHLNHTSKPVSPGSCLTKSGPGRWKTPATSQPTPVAISQPIRTDLPP
PPPPPPVHYAAEFDEPQMDLPLPPPPPPNQVGAQASSQVAAAERKKREEHQRWYEKEKAR
LEEERERKRREQERKLGQMRSQPLIPPQPVVPPVSLQQVKSEKTATFQRSQETVIRELQP
QQQPRTIERRDLQYITISKEELSSSDSLSPDPWKRDAKEKLEKQQQMHIVDMLSKEIQDL
QNKPDRTAEENDRLRKLMLEWQFQKRLQESKQKDEDDDEEEDDDVDTMLIMQRLEAERRA
RQTAVPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEERRQQEEERTRREAEEKRR
QEEEYYNRLEAERRRQHDEAERRLLEPDEPGLYRPPLPREYELPSPTPSSNAPPPPPQRN
TSYLKTQVLSPDTIYTAKFVAYNDDEEEEDSNLAGQDKYSSTRKSYGDFPPATLKPQQPS
RQPRPVSDGLFLSNSFQSSPVNANSTAAKKSQPPPPPNKPSFIHASSSKGINSYTGSSGA
TVGAHEVYRDPRDKRSKSQDTDLPGAPENLTFRERQRLFSQGQDVSNKVKASRKLMELEN
ELNTK
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcagccgggaggaggagcggcgtaaactcgccgacatcatcaaccac
tggaacgcgaaccggctggacctgttcgagatcagcgcccccaccgaggatttggaattt
catggtgtgatgagattttactttcaagacaaagcagctggaaactttgcaacaaaatgt
atccgagtctcaagtaccgccacaactcaagatgtgatagagactcttgcagagaagttc
cggccagacatgcgcatgttgtcatccccgaaatactcactctatgaggtgcatgtcagt
ggagaagaaagaagattagatgtggatgagaagcctcttgttgtacaattaaactggaac
aaagatgatcgagagggaagatttgttctcaagaatgaaaatgatacggttcctccaaag
aaggctcagagtaatggccctgaaaaacaagaaaaagaaggagtaatacagaatttcaaa
cgaactctctcaaaaaaagaaaagaaagaaaagaagaggcgtgaaaaagaggcactgcgg
caagcatcagataaagatgatcgacttcttcatggggatgatattgagaattctcgcctt
gcagctgaggtttacaaagatatgcctgagaccagcttcacccgcacaatatctaatcct
gaggtggttatgaaacgacggcggcaacaaaaactagagaagagaatgcaggaatttcgc
agttctgatggcagaccagactcaggtgggacactgagaatttatgcggacagtttaaaa
ccaaatataccatacaagacaatcctgttgtcaactacagatactgcagactttgcagtt
attgaagcactggagaaatatggcttggagaaggaaaatcccaaggattattgtattgct
cgtgtcattctgcctcctggtgctcagcactctgatgataaaggtgctaaagaaactatt
ctggatgatgatgagtgtccacttcagatattcagggaatggcctagtgataaaggaata
ctagtctttcagttgaaaaggcggcctcctgattatgtcccaaagaaatccaagaaaata
gctgatggaaagccattaaaggggaaggagagagttgatgggtctggctacggctcttgc
cttcctcctgagaaactaccatacctggtagaactaagtccagggagaaggaatcacttt
gcctactacaactatcacgcttatgaagatggttctgactccagagataaaccaaagctt
tatcgtctacaattaagtgtcactgaagttggaactgaaaaatttgatgacaattccatt
cagttatttggtccaggaattcagcctcatcattgtgatctcactaatatggatggagtt
gttactgtgaccccaagaaacattgatgcggaaacatacgtagaaggtcagcgtatttca
gaaaccactatgctgcaaagtggaatgaaggttcagtttgggtcatctcacgtgtttaag
tttgtggatcccactcaggaccatattatccctaaaagacctattgatgcaagccttatg
gtcaaaggtccaaggcacaaagctggagccgttcaggaaactacctttgatctggaggga
gatgttcacagcggaacggcattaccagcaagcaagagcaccagcaggcttgatggtgac
agaacatcatcagcatccagcacagccgagcgaggaatggtgaagcccatgataagaata
gagcagcagcaagattatcgcagacaggaaagcagatctcaggatacccatggaccagaa
ctgattctacctgccagtattgaattcagggaaagctctgaagatgccttcttatctgcc
attataaattatacaaatagctcgacagttcatttcaaactgtcacccacatatgttttg
tatatgacatgtcggtatgtattgtcaagccagtacagacctgacatcactcccactgag
cgtactcacaaagttattgcaatagtcaacaagatggtgaatatgatggaaggagtcata
caggaggtagaccaggttgatcagaaacagaagaatattgctggggcacttgccttttgg
atggcaaatgcatctgaattactgaattttgtaaagcaagaccgtgatcttagccgaatc
actgtggatgctcaagatgttttggcacacttggttcaaatggcattcaagtacctagtt
cactgtctgcagtcagagcttaataactacatgccagcatttcttgatgatccagaggaa
aataatccacagaggcctaaaatagatgatgtgctgcacacattgactggagctatgtcc
ttgttgcgacggtgtagagtgaatgctgcactgactatacagctcttctcccagttgttt
cactttatcaacatgtggctttttaacagactagttacagccccagattcagggttatgt
tcccattattggggagctattgttcgccagcagttgggtcatattgaggcctgggcagaa
aaacagggtttagaattggctgcagattgccacttaagcagaatagtgcaggcaaccaca
ctgctcaccatggacaagtactcacatgctgatgttccaaatattaacagcacttgcttt
aagttgaattctctacagctacaagctttgttgcagaattaccactgtgctccagatgaa
ccactcataccaacagaactgatagagaatgtagtaactgttgcagaaaatacggctgat
gaactcgctcgcagtgatggcagagaagtccaattggaagaggatcctgacttacaactc
ccttttcttttaccagaagatggctattcctgtgatgttgtcagaaatgttccaagtgga
ttacaagaatttttggatcccctctgtcagagaggtttttgtaggttaatacctcataca
cggtcaccaggcacgtggacaatatactttgaaggtgcagactatgaaagtcacctgtca
catgagaatgctgagctagctcagcctttgaggaaagaacctgagattataactgtaaca
ctaaaaaaacaaaatggaatgggcctcagcattgttgctgctaagggtgctggtcaagac
aaacttggaatatatgtcaagtctgttgtgaaaggaggtgctgcagatgtggatggtcgt
ctggcagcaggggatcagctgctcagtgtggatggtcgaagcttggtggggctgtcccag
gaaagggcagcagaacttatgacaaggacaggttctgtagtaacactggaagtagcaaaa
caaggagcaatataccatggtctggcaaccctgctaaatcagccatctccaatgatgcaa
agagtttctgaccgccgtggctcaggtaaaccccgaccaaagagtgaaggttttgagctg
tataacaactccacgcaaaatgggtcacccgagagcccccagctgccatggacggagtac
agtgaaccaaagaagctgccaggagatgacagattaatgaagaacagagccgatcatcgc
tccagccccaacgtagcaaatcagcctccaagccctgggggaaagaatgcttatgcatct
ggaactaccaccaaaataacctcagtctcgactggaaatctttgtacagaggaacaaact
ctgcctccacgacctgaagcttatcctatcccaactcagacctataccagagaatatttc
acattcccagcttcaaaatcccaggatcgaatgggtccaactcagagtcagtggccaaat
tatgaagagaaaccacagatccaggcagagagtaatcattcaatcaatactacaatgcag
cgtgtggctcgatcccaggaagaactccgagataaagttttccagccagagaggaatcgc
ttggaggttgttatcaggaaggatatagagttcattgatcggaagtcagacagcgatcag
tggatgaattcatctgtggattctagcacatctagccaagagcacctgaaccatacatcc
aaaccagtttcacctggttcttgcttaactaaaagtggacctggccgttggaagactcca
gctacaagccagccgactccagtggcgatttcccagcccatcagaacagatcttcctcct
ccgccgccacctcctccagttcattatgcagctgaatttgatgaaccacaaatggatttg
cctctgcctccccctcctccaccaaaccaagtaggagcacaagcatcttctcaggtggct
gctgctgagcgtaaaaaacgagaagagcaccagaggtggtatgaaaaggaaaaggcacgt
ttggaagaagaacgagaaaggaaacgccgtgagcaagagagaaaactgggccaaatgcgt
tcgcagccactaattcctccccagcctgtggttcctcctgtttcccttcaacaagtgaaa
tcagaaaaaactgcaactttccagaggtctcaagaaacagtcattcgagagttgcagcca
caacagcagcctcggactattgagcggagagatctgcagtacattactatcagcaaggaa
gaattgtcctctagtgacagcctctctccagacccctggaaacgagatgccaaggagaaa
ctggagaagcagcagcagatgcacattgtggacatgctgagtaaagagattcaggatctt
cagaacaagcctgatcgtacagctgaagagaatgaccgcctccgcaaactcatgctagag
tggcagttccaaaaacgacttcaggaatcaaagcaaaaggatgaagatgatgatgaagaa
gaggatgatgatgtggatactatgcttatcatgcagcgactggaggcagaaagaagagca
aggcagactgctgtgccagcaatctctgttctagacttgttacaggatgaagaacgcaga
cggcagcaacagttggaagaaatgcgcaagcgagaagcagaagacagagccaggcaggag
gaggagcgccgacagcaagaggaggagcggaccagaagagaggcagaagaaaagaggcga
caggaagaggagtattataatcgcttagaggctgaaaggcgcaggcagcacgatgaagca
gaacgaagattgctggaaccagacgagcctggtctgtacagacctccacttccacgggaa
tatgaactcccatccccaaccccttcatctaacgctcctcctcccccacctcagcgaaac
acctcttacctcaaaacacaggtcctctcccctgacacgatttatactgccaagtttgtt
gcatacaatgatgatgaggaggaggaggattccaatctagcaggtcaggataagtactcc
agcacaagaaaatcttatggtgactttcctcctgccacccttaaaccacagcagccctcc
cgccaacctcgcccagtttcagatggcctctttctttccaactcattccagtcatctcca
gtcaatgccaacagtactgctgccaaaaaaagccagcccccgcccccaccaaacaaaccg
agtttcatccatgccagcagctctaaaggaataaattcatacactggatcttcgggagca
acggttggggcccatgaagtttatcgggatccgagagacaaacgatctaaaagtcaagat
acagatttacctggagcaccagaaaatttgacgttcagggaacgccagcgacttttttca
cagggtcaagatgtatccaataaagtaaaagcttctaggaaactaatggaactggaaaat
gaattgaacacaaaataa
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integrated database retrieval system
