Tympanuchus pallidicinctus (lesser prairie-chicken): 128087616
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Entry
128087616 CDS
T08967
Symbol
NCAM1
Name
(RefSeq) neural cell adhesion molecule 1 isoform X1
KO
K06491
neural cell adhesion molecule
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
tpai04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
128087616 (NCAM1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
128087616 (NCAM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128087616 (NCAM1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tpai04515
]
128087616 (NCAM1)
04090 CD molecules [BR:
tpai04090
]
128087616 (NCAM1)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128087616 (NCAM1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tpai00537
]
128087616 (NCAM1)
04091 Lectins [BR:
tpai04091
]
128087616 (NCAM1)
Membrane trafficking [BR:
tpai04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
128087616 (NCAM1)
Cell adhesion molecules [BR:
tpai04515
]
Immunoglobulin superfamily
NCAM1/2
128087616 (NCAM1)
CD molecules [BR:
tpai04090
]
Proteins
128087616 (NCAM1)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
128087616 (NCAM1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tpai00537
]
Others
128087616 (NCAM1)
Lectins [BR:
tpai04091
]
I-type lectins (Siglecs)
128087616 (NCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
Ig_DSCAM-DSCAML_C
C2-set_2
C1-set
C2-set_3
Izumo-Ig
V-set_CD47
Receptor_2B4
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
128087616
NCBI-ProteinID:
XP_052553310
LinkDB
All DBs
Position
Unknown
AA seq
1124 aa
AA seq
DB search
MLPAAALPWTLFFLGAAASLQVDIVPSQGEISVGESKFFLCQVAGEAKYKDISWFSPNGE
KLTPNQQHISVVRNDDFSSTLTIYNANIDDAGIYKCVVSSVEEGDSEATVNVKIFQKLMF
KNAPTPQEFKEGDDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK
KTDEGTYRCEGRILARGEINFKDIQVIVNVPPSVRARQSTMNATANLSQSVTLACDADGF
PEPTMTWTKDGEPIEQEDNEDKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATI
HLKVFAKPKITYVENKTAMELEDQITLTCEASGDPIPSITWKTSTRNISNEEKASWTRPE
KQETLDGRIVVRSHARVSSLTLKEIQYTDAGEYVCTASNTIGQDSQAMYLEVQYAPKLQG
PVAVYTWEGNQVNITCEVFAYPSAVISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDS
ENDFGNYNCTAVNRIGQESSEFILVQADTPSSPSIDRVEPYSSTARVEFDEPEATGGVPI
LKYKAEWRALGEGEWHSRLYDAKEANVEGTITISGLKPETTYSVRLSAVNGKGVGEISLP
SDFKTQPVRIPHSREPSAPKLEGQMGEDGNSIKVNVIKQDDGGSPIRHYLIKYKAKHSSE
WKPEIRLPSGSDHVMLKSLDWNAEYEVYVIAENQQGKSKPAHYAFRTSAQPTVIPASTSP
TSGLGTAAIVGILIVIFVLLLVAVDVTCYFLNKCGLLMCIAVNLCGKSGPGAKGKDMEEG
KAAFSKDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLTEPEHTTDTAATVEDMLPSV
TTGTTNSDTITETFATAQNSPTSETTTLTSSIAPPATAIPDSNAMSPGQATPAKAGAAPV
SPPPPSSTPKVAPLVDLSDTPSSAPATNNLSSSVLSNQGAVLSPSTVANVAETSKAAAGN
KSAAPTPANLTSPPAPSEPKQEVSSTKSPEKEAAQPSTVKSPTETAKNPSNPKSEAASGG
TTNPSQNEDFKMDEGTFKTPDIDLAKDVFAALGTTTPATVASGQARELASSTADSSVPAA
PAKTEKTPVEDKPEVQATETKTPPAEVKTVPNEATQTNENESKA
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccgccgccgcgctgccctggacgttgtttttcctcggagccgcagcctctcta
caagtggatattgttcccagtcagggagagatcagcgttggagaatccaagttcttctta
tgtcaagtggcaggggaagccaaatacaaagacatttcctggttttcccctaatggtgag
aagctgacgcccaaccagcagcacatctcagtggtgcgaaacgacgacttctcctccacc
ctcaccatctacaatgccaacattgatgatgctggcatctataaatgtgttgtcagcagc
gtggaggagggagactctgaagccaccgtcaatgtgaaaattttccaaaagctcatgttc
aagaatgcccccactcctcaggaattcaaggaaggggatgatgctgtgattgtgtgtgat
gtggtcagctcactgcctcctaccatcatctggaaacacaaaggcagggatgtcatcctg
aaaaaagatgttcggtttatagtgctgtccaacaactacctgcagatccggggaatcaag
aaaacagatgaggggacgtaccgctgtgagggccgcatcctggctcgtggggagatcaac
ttcaaagacattcaggtcattgtaaatgtacctccttctgtgcgtgccaggcagagcact
atgaacgccactgccaacctcagccagtctgtcaccttagcatgtgatgctgatggcttt
cctgagccaaccatgacgtggacaaaggatggagagccgatagagcaggaggacaatgaa
gacaaatacagttttaactacgatgggtctgagctgatcatcaagaaggtggataagagt
gatgaagcagagtacatctgcattgctgagaacaaggctggcgagcaggatgccaccatt
catctcaaagtctttgcaaaacccaaaatcacgtacgtggagaataaaacagcgatggag
ctggaggaccagatcacattgacctgtgaggcatctggggacccaatcccttccatcacg
tggaaaacctccacccggaacatcagcaacgaagagaaggcttcgtggacccggcccgag
aaacaagagaccctggatgggcgcatcgtggtgcgcagccacgcgcgggtttcgtccctg
actctcaaagaaatccaatacacagatgctggagagtacgtgtgcacagccagcaacacc
atcgggcaggactcgcaggccatgtacctcgaagtgcagtatgctcccaagcttcagggc
cctgtggccgtctatacctgggaagggaatcaagtgaacatcacctgtgaggtatttgct
taccccagtgctgtcatctcctggttccgggatggacagctgctccccagctcaaactac
agcaacatcaagatctacaacactccatcagcaagctacctggaggtgacaccagactct
gaaaatgactttgggaactacaactgcactgctgtgaaccgcattggccaggaatcctca
gagttcattcttgtgcaggcggatactccgtcctctccttctattgacagagttgagccc
tactctagtactgcccgcgtggagtttgatgagcctgaagctactggtggggtgcccatc
ctcaagtacaaagcagagtggagagcactgggtgaaggagaatggcactcgagattgtat
gatgcaaaagaagcaaatgtggagggcacaatcactatcagtggcctgaaacctgagaca
acctactcggtgagactgtctgcagtcaatggcaagggtgtgggtgagattagtctgcca
tccgacttcaagacacagccagttcgtatccctcactcacgggaacccagtgcacccaaa
ctggaagggcagatgggagaagacggaaactccatcaaagtgaatgttatcaagcaggat
gacggtggctccccaatcaggcattacctgatcaaatacaaagctaaacattcctcagaa
tggaagccagagatcagactgccttctggcagtgaccatgtaatgctcaagtctctggat
tggaatgcagagtatgaggtttatgtgatagctgaaaaccagcaagggaagtccaaacct
gctcactatgctttccggacatctgctcagcctactgtcatcccagccagcactagccct
acgtcaggcctggggactgctgccatcgtaggcattctcattgttatctttgtgctgctc
ctggtggctgtggatgtcacctgctacttcctgaacaaatgtggcctgctgatgtgcatt
gctgtcaacttatgtggcaagtctggaccaggagccaagggcaaagacatggaggagggc
aaagctgccttctcgaaagatgagtccaaggagcctattgtggaggtgcggactgaagag
gagcggacccccaaccacgatgggggaaaacacacagagcccaacgagaccacaccactg
acagaaccagagcacaccaccgataccgcagctactgttgaggacatgctgccttctgta
actacgggcaccactaactctgacactatcactgaaacttttgccactgctcagaacagc
cccaccagtgagaccaccaccctgacctccagtattgccccaccagccacggccattcct
gactcaaacgccatgtcgcctggccaggctactccagccaaagcgggagctgccccggtc
tctccgccaccaccctcttctacgcccaaagtggctccccttgttgatctcagcgatacc
ccaagctctgctccagctactaacaatttgtcttcaagtgtcctgtccaaccaaggtgcg
gtgctgagccccagcactgttgctaacgtggccgagacctccaaagcagcagctggtaac
aagtcagctgccccaacccctgcaaacctcactagccctccagctccatcagagcccaag
caggaggtctcaagcaccaagagccccgagaaagaagctgcgcagcccagtacagtgaag
agcccaacagagacagccaagaacccgagcaacccgaagagcgaggctgcttcaggcggc
accacaaacccctcccagaatgaggactttaaaatggacgaagggaccttcaagacacca
gacattgatcttgcaaaggatgtttttgcagctcttggcactactactcctgccactgtg
gctagcgggcaagctcgtgagcttgcttcttccactgcagacagctctgtacctgctgca
cctgcaaagaccgagaaaaccccagtagaagacaaacctgaagtgcaagcaacggaaact
aagacacctccagcagaagtgaagacggtccccaacgaagccacacaaacaaatgaaaat
gagagcaaagcatga
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