Tympanuchus pallidicinctus (lesser prairie-chicken): 128088402
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Entry
128088402 CDS
T08967
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03082
ATP-dependent chromatin remodeling
tpai03083
Polycomb repressive complex
tpai04110
Cell cycle
tpai04330
Notch signaling pathway
tpai04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128088402 (HDAC1)
03083 Polycomb repressive complex
128088402 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
128088402 (HDAC1)
04350 TGF-beta signaling pathway
128088402 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
128088402 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128088402 (HDAC1)
Enzymes [BR:
tpai01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128088402 (HDAC1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
128088402 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
128088402 (HDAC1)
BRAF-HDAC complex
128088402 (HDAC1)
REST complex
128088402 (HDAC1)
SHIP complex
128088402 (HDAC1)
MiDAC complex
128088402 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
128088402 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
128088402 (HDAC1)
Chromatin remodeling factors
NuRD complex
128088402 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
128088402
NCBI-ProteinID:
XP_052554878
LinkDB
All DBs
Position
Unknown
AA seq
480 aa
AA seq
DB search
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKRISIRNSDKRISCDEEF
SDSEDEGEGGRKNVANFKKAKRVKTEEEKEEEEKKDEKEEEKAKEEKAEPKGVKEETKST
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcaggggaccaagcggaaagtctgctactactacgatggtgatgttgga
aactattattatggccagggacaccccatgaagccccacaggatccggatgacccacaac
ctactgctgaactacggcctttacaggaagatggagatatatcgccctcacaaggcgaac
gcggaggagatgaccaagtaccacagcgacgactacatcaagttcctgagatccatccgc
ccagacaacatgtctgagtacagcaagcagatgcaaagatttaacgtcggggaggactgc
cctgtgttcgatgggctgtttgagttctgtcagctctctgctggaggctcagttgccagc
gctgtgaagctgaacaagcagcagacagatattgctgtgaattgggcaggaggccttcac
cacgctaagaagtcggaggcttctggcttctgttacgtcaacgatattgtcctggctatc
ttggagctcttgaagtatcaccagagggtcctgtatatcgacatcgatattcaccatgga
gatggtgtggaggaagccttctacaccaccgaccgagtgatgacggtgtcctttcacaag
tatggagagtacttccctggaacaggggacctgcgggacattggtgcaggcaaaggcaag
tactatgctgtcaactatcccctccgggatgggattgatgatgagtcctatgaggcaata
ttcaagccggtgatatctaaagtgatggagacattccagcctagtgcagttgtcctgcag
tgtgggtcagattctctgtccggagacaggctgggttgttttaatctgaccatcaaaggt
catgccaagtgcgtggagtttgtcaaaagttttaatttgcccatgctgatgctgggggga
ggcggctacacgatccgcaacgtggccaggtgctggacctacgagactgctgtggctttg
gacactgagatcccaaatgaactcccatataatgactattttgagtacttcggaccagac
tttaagctgcacatcagtccctcaaacatgacgaaccagaataccaatgagtatctcgag
aagatcaagcagcgtctctttgagaacctgcgcatgctgcctcatgcccctggcgtccag
atgcagccaattcctgaggatgctgttcaggaagacagtggagatgaagaggaagaggat
cctgagaagcgcatttcaatccgcaattctgataagagaatatcctgtgatgaagaattc
tctgactctgaagatgaaggggaaggagggcgcaaaaatgttgctaactttaagaaggcc
aagcgtgtgaaaacagaagaggaaaaggaggaggaggagaagaaggatgagaaagaagag
gaaaaagcaaaagaggagaaagccgaacccaagggggtgaaggaagagacaaaatccacc
taa
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integrated database retrieval system
