Tympanuchus pallidicinctus (lesser prairie-chicken): 128088576
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Entry
128088576 CDS
T08967
Symbol
DCHS1
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tpai04515
]
128088576 (DCHS1)
Cell adhesion molecules [BR:
tpai04515
]
Cadherins
Cadherin related
128088576 (DCHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_pro
RET_CLD1
Cadherin_4
CADH_Y-type_LIR
Glrx-like
Motif
Other DBs
NCBI-GeneID:
128088576
NCBI-ProteinID:
XP_052555219
LinkDB
All DBs
Position
Unknown
AA seq
3266 aa
AA seq
DB search
MEQMKGSAMLLLELLILGGLRAEKGSAVLGTLDLQIDEEQPAGTIIGDISAGLPPGTSAY
MYFISAQEGSGVATDLWIDENRGIIKTARVLDRETRDHYSFIAVTPEGITVEVNIQVNDI
NDHAPAFPKQHSTFQIPEHTPVGSRFPLDPAFDADSGLLNTQGYVIKGDNVGQAFRLETR
RGPNGVLYLDLVVSNVLDRENRSSYSLVLEAYDGGSPPRSSQMTLDVSVQDINDNAPTFN
QSRYHTLISENLKPGSSILQVFASDADEGDNGDVIYEINRRQSDPDQYFTIDSRTGVIKL
NKGLDYEVRKVHELVVQARDRAVHPEVTTAFVTIHVRDYNDNQPTMTIIFLSEDGSPQIS
EGAQPGQYVARISVSDPDYGEYSNVNVTLEGGDGKFALTTKDNIIYLICVDQLLDREERD
SYDLRVTATDSGTPPLRAESTFVLQVIDINDNPPLFDQQEYKQSIPEVVYPGSFVLQVTA
RDKDQGPNGEVQYSIVHSQDTHSSWFAIDPATGIITTAAPLDYEKDPQPQLTVLATDRGT
PALSSSAVVLVALQDVNDNEPVFRSNFYNVSLKENTPVGTCFLQVTATDADSGLFGTLSY
SLGSGIGSVVPTQFSIDKHTGHLCTAQPLDRDEGTSAYDFTITAVDGGGLNSMVYVKVFL
EDINDNRPVFYPLEYAASISTQSMPGTAVLRVTAHDKDEGMHGRVTYRIVLGNSPPLFSL
NKDTGVISLSWSLSGKANTLVQLVISAEDGGGLQAQPNARVNISIVEGTVSPPVFEQAQY
FFTVPEDTLQGATVGAVRAQNPPGHTDDIFYSISSGDPHGYFSIDSDSGQLRTSLPLDHE
SQAVLVLDVQARSGSPPAYSNTRVKISVSDVNDNAPAFPSPSDSILLPEATEPGTTVYTL
QAEDRDSGANGQVNFELVSGGEGTFSVERSSGAVRLAGALQYEASAAYRLAIAARDSGVP
QLSSTFTLLVHVQAEHDNGPIFDTLTYRVEVREGVPVSTRFLQVRALARDAEAVTLTYHL
RADGDAASFGIMSESGWLYVKSALDRETRDLYVLTVLASAGGGGSGGEARKTGTSTVRIS
ITDENDNSPRLSEERYFFTVPENQAPGSSVGRVMASDRDAGQNSRLTYRLLQHDSNFLIH
TQTGELSTKHSLDRELQSSYQLLVIVQDGGAPPRSATGTIYVTVLDENDNAPAFLHIPAG
QELTVQVLEEKPSGLLVASLQAKDPDEGENGTITYSLIGAWAERFTLHTATGELRAATVL
RRSDRAEYVFTVTASDRGMVPCSTSAVVRVQVLPSSRLLPRPDATVLTLHPPEGVRPGSV
IGSVAPPDAPARGQLTYTVVGGGGDGTFVVDSVTGEIYAARELDYEAGARHTLQVSAEDT
QHGYPSSRLVLVQIHVQDCNDQAPTFPEDPITIVVPEDAQAGSSVFTFQALDGDGAGPNS
QVRYALLRQEPPGGPFQLDGRSGLLSLRQSLDREAVASFLLVVEATDQARNVSQRRSSAV
TARVFVTDVNDNAPVFLSPAAISVTEDRPTGFVALHVVAQDNDLGENGRVSYSLRAGNSD
GRFHLNPSTGALSVVRALNREEVVQHNLTVVAADHGFPRRSATQLLSILVLDVNDEAPTF
EKPEYEAHITENLPAGSPVLQVLATDRDLGANGQVTYGGLSGGPFSIHPQTGLIVTTHPL
DREEQEQHVLMVYARDGGLPPNLSKATVRITVGDENDHTPQLESESCSVEVPENQSRVAL
YTLRATDPDGDENGRLEYRVADGDPEQDFILDPVSGVLSTARALDREQVAFYSLTVVVQD
HGTPPRSATMSVNVQVLDLNDNAPGFAQASYVVEVPEDLPVGSLVLQLEAKDPDEGTNGQ
VTYYLGNESLGMFQVEPQSGRITSAQELDRERQPTYSFLAKAVDSAPWEPKSAAVRVTVT
VRDVNDHAPAFLHSPLTVSLSRHTPLKQVVATMRAEDRDAGANASILYRLATPNSAFSIN
SYTGDIQLLQPLSSLSQRQRTLFVLATDLGQPALSSTGVVVIHVQEEPYRGLRFPRSTNE
VVLPENAAPGTAVASIQAVHMGGSSGRITYSIISGNEKNAFLIQPSSGAISVQDSSSLDF
EASPRLRLVVQAETTASFGFMAINLNLQDVNDNLPRFQLQNYVAFIWESQSYDSPVIQVL
ADDLDQGMNGQVTYAINQSLPMTGLYHIDPQSGTITTAAILDREIWSQTRLVVTAMDRGT
PPLVGSATLTVVVMDINDNSPTIPFPWEVRVPENMLLGTQIAQLTGNDVDSGPALSYALL
LDGDAVGTFSVLRYGGRIALTGPLDYEQRSRYSLTLRASDSRHETEANLTVIVEDMNDNA
PAFSQAFYQVTLPEHTPAGSILLTVSATDMDSGSNGEITFHLAVPSLDVAIDPSNGTLFT
IRSVEFDANQPTLELVVEARDHGSPSLSSWATVQLQVLDVNDHSPIFQVPHYNASVPEDL
RPGTTVLTLDAGDADLSRENAGFDYTIVSGNGGNAFQVESRVAWAGGQLRTQGALVLVEP
LDFEAIPVYNLTVAALDRGLPQRSTTVPVLITVQDVNDNPPVFARAEYRTAVSESTPPGT
ELLRLTAHDADSGPRGHVHYTISSGDQHGLFQIHESTGALCLARPLDRETQASHALVVQA
MDVPGGHFALVPVAIEVKDVNDNKPYFPVEVLSASMRENLPPGTLVTTLRAIDTDTGVFG
ELHYAVLEQPVGGPGVAEGRDAFAINSSSGELRSRLTFDYERAKAFQLLVRATDAGNASA
TVTVRVLVTGEDEYDPIFLSPSFSFEVPEGAHKGQSIGRVLATDEDEGADGVVLYNLAKP
SPYFAINQTTGTIYLRVDSQPQAGAGRTKREPREMSLEVQARSPLPASRSASAQVTIDVT
HTSFGLAPDLNLLLVAVAASLGVVVVLAAVAIVLALVRSRHRRSHEKTEGDRPLAHVQSS
SLQKLGHEEPALPGAEHIYHQALPGYGGEPAGPYTRGGSLDPSHSSGRGSAEAAEDDEIR
MINEYPRVASITASMQEHISARGPDSGIQQDADQLSDISCEPAALESSQWFKSKKGSGLL
LPGPTSQLYREDGGGSAFLGVRCGLSVSSQPQDYTFPEDGKPSVEGSLTAIVASDEELRG
SYNWDYLLNWCPQFQPLASVFTEIARLKDESSLRKPFPTKPKAEPKPRIDPPPLITSVAH
PGAKSVPPKPPAGRTFPHPSSLRRSPISHEGSISSSAMSPSFSPSLSPLAARSPVVSPFG
ISQGPSASTISAEHSLEPSEEAELRI
NT seq
9801 nt
NT seq
+upstream
nt +downstream
nt
atggagcagatgaaagggtcggccatgcttctgttggagctgctaatccttgggggcctg
agagcagagaagggctctgctgtcctgggcaccctggatctacagatagatgaggagcag
ccagcaggcaccatcattggggacatcagtgctggcctgccccctggcaccagtgcctac
atgtacttcatttcagcgcaggagggcagtggcgttgccactgacttgtggatagatgag
aacaggggcatcatcaaaacagcccgcgtccttgaccgagagacccgggaccattacagc
ttcatagctgttacccccgagggcatcacagtagaagtgaatatccaagttaatgacatc
aacgaccacgctccagcctttcccaagcaacacagcactttccagatcccagagcacaca
cctgttggcagcagatttcccttggacccagcctttgatgctgacagcggcctgctcaat
acccaaggctacgtgattaagggtgacaatgtggggcaggccttccgtctggaaacacgg
cgaggacccaatggggtcctgtatttagacctggtggtcagcaacgtcttggatcgggag
aaccgttcgtcgtactccctggtgctggaagcctatgatgggggctctcctcccaggagc
agccagatgacgttggatgtgtccgtccaggacatcaatgacaacgctcccaccttcaac
cagagccgctaccatactctcatatcagagaatttgaaacctggcagtagcatcctgcag
gtcttcgcgtccgacgcggatgaaggagacaacggtgatgtgatttatgagatcaaccgg
cgacagagtgatcctgaccagtacttcaccatcgactcccgaactggagtcatcaaactc
aacaagggtctggactacgaagtcaggaaggtgcacgagctggtggtgcaggcacgggac
agggctgtccaccctgaggtcaccacagcctttgtcactatccacgtgcgcgactacaat
gacaaccagcccaccatgaccatcatctttctgagcgaagacggctcccctcagatctct
gagggagcccagcccggtcagtatgtggcacgcatctctgtttctgacccagattatgga
gagtactccaatgtcaatgtcaccctggaggggggggatggcaagtttgccctcactaca
aaggacaacatcatctaccttatctgcgtggaccagcttctggatcgggaggaaagagac
tcctatgatttgcgagtgacagcgactgattcgggaacacctccgctccgagcagaatcc
acctttgtgctgcaggtgatagatatcaatgacaaccctccactctttgaccagcaggag
tacaaacagagcatccctgaggttgtgtacccaggcagctttgtcctgcaagtgaccgct
cgagacaaagaccagggtcccaacggggaggtgcagtacagcatcgtgcacagccaagac
acccattccagctggtttgccattgaccctgccacaggtatcatcaccactgctgcccca
ctggattacgagaaggatcctcagcctcagctgacagtgctggccacagacaggggaacc
cctgccctctcttcttcagctgtggtgcttgtggccctgcaggacgtcaatgacaacgag
ccggtgttcaggagtaatttctacaacgtgtccctgaaggagaacaccccagtcggtacc
tgcttcctacaggtgacagccaccgatgccgacagcggcttgtttgggaccctttcgtac
tctcttggttctggcatcggcagcgtggtcccgacgcagttcagcatcgacaagcacacg
gggcatctgtgcacggcgcagcctctggaccgcgacgagggcacgtctgcctacgatttc
accatcactgccgtcgatgggggtggcttgaactccatggtgtatgtgaaggttttcctg
gaggacataaatgacaatcggccggtgttctacccactggagtatgctgccagcatcagc
acacaaagcatgccgggcacagctgtgctgcgtgttactgcgcacgacaaggatgagggg
atgcatggcagagtgacctatcgcatcgtcctggggaactcgccccccctcttctccctc
aacaaggacacaggtgtcatctctctctcgtggtccctgagcggcaaagccaacaccctg
gtgcagctggtgatctctgcagaagacggagggggcctgcaggcgcagccgaatgcccga
gtcaacatcagcatcgtggagggcacggtctcaccccctgtctttgagcaagctcagtac
ttcttcacagtgccggaggacacgctgcagggcgccaccgtgggggctgtccgtgcccaa
aatcctcccggtcacaccgatgacatcttttattccatctcctcgggggatcctcatggc
tacttttccattgactccgactccgggcagctccgcaccagcttgcctctggatcacgag
tctcaggcggtcctggttctggatgtccaggcccgcagtggttcccccccggcctacagc
aacacccgcgtgaaaatctccgtgtcagacgtgaatgacaacgcgccagcattcccttct
ccctctgactccattctgctgccagaggccactgagcccgggactacagtgtacactttg
caggccgaggaccgtgacagcggtgccaacggccaggtgaattttgagctggtgtcagga
ggcgaaggcaccttcagcgtcgagcgctcgtcgggggcggtgcggctggccggggcgctg
cagtacgaagccagcgcagcctacaggttggccattgcggcccgagacagcggcgtgccc
cagctcagctccaccttcacgctcctggtgcacgtgcaggctgagcacgacaacgggccc
atctttgacacgctcacctaccgtgtggaggtgcgggaaggcgtgcctgtctccacgcgc
ttcctgcaggtgcgggccctggcgcgggatgcagaagctgtgaccctgacttaccacttg
cgtgcagatggagatgctgccagctttggcatcatgtctgagagcggttggctgtatgtc
aaaagcgccctggaccgggagacgcgagacctgtatgttctcacagtgctggcgtcggcg
ggaggcggcggctcagggggggaagcccggaaaacgggcaccagcaccgtacggatcagc
atcactgatgagaacgacaacagcccccggctgagtgaggagcggtacttcttcactgtt
cctgagaaccaggctcctggcagcagcgtagggagggtgatggcaagcgatcgggacgct
gggcagaacagccgtctcacctaccgcctgctccagcacgactccaatttcctcatccac
acgcagacaggggagctcagcaccaagcacagcttggaccgggagctgcagtccagctac
cagctgctggtgattgtgcaggatggaggagcaccgccccgcagtgccacgggaaccatc
tatgtcactgtgctggatgagaacgacaacgctcctgcttttcttcatatccctgctggc
caggagctgaccgtgcaggtgctggaagagaagccgtcgggacttcttgttgcctcgctg
caagccaaggaccctgacgagggtgagaatgggaccatcacctactcactgataggagcc
tgggcagagcgtttcacactgcacacggccactggggagctgcgggctgccacggtgctg
cgccgctccgaccgcgctgagtacgtcttcactgtgacggccagcgaccggggcatggtg
ccctgcagcacctcagccgtcgttcgtgtccaggtgctgccctcctcccgcttgctgccc
agacccgatgccaccgtgctgacgctgcaccccccggagggggtcaggccgggctctgtg
atcggctcagtggccccccccgatgcccctgcccggggacagctgacctacacggtggta
ggaggtggcggggacggcacttttgttgttgacagcgtgacaggggagatctacgccgcc
cgggagctggattacgaggccggggcccggcacacgctgcaagtgagcgccgaggacacg
cagcacggctacccgtccagccggctggtgctggtgcagatccacgtgcaggactgcaac
gaccaggcgcccaccttccccgaagaccccatcaccatcgtggtgcccgaggacgcgcag
gccggctcgtctgtcttcaccttccaggctctggatggggacggggccggccccaacagc
caggtgcgctacgcgctgctgcgccaggagcccccggggggccctttccagctcgacggc
cgctcggggctgctgagccttcgccagagcctcgaccgcgaggccgtggcctccttcctc
ctggtggtggaggccacagaccaggcccgcaacgtcagccagcgccgttcgtccgctgtg
acggcgcgtgtgttcgtgaccgacgtgaacgacaacgcgcccgtcttcctgtcgcccgct
gccatcagcgtcaccgaggaccggccgactgggtttgtggctctgcatgtggtggcccag
gacaacgatctgggagagaatggacgagtgagctactcactgcgagcgggcaacagcgat
gggcgcttccacctcaaccccagcaccggtgctctctctgttgtgcgggctctgaaccgt
gaggaggtggtgcaacacaacctgactgtggtggctgctgaccatggcttcccgcgccgt
tcagccacgcagctactctccatactggtgctggatgtcaatgatgaagctcccactttt
gagaagcctgagtacgaggcgcacatcacggagaaccttccagctggcagccctgtcctg
caggtgctggccacagaccgggacctgggtgccaacggacaggtgacctatggaggtctc
tctggggggccgttctccatccacccgcagacaggtctcattgtcaccacgcatcccttg
gaccgtgaggagcaggagcagcatgtgctgatggtctatgcccgggacggtggcctgccc
cccaacctctccaaggcaactgtgcggataacagtaggggatgagaacgaccacacacca
cagctggagagtgagtcctgctctgtggaggtgcctgagaaccagagccgcgtggcgctc
tacaccctgcgtgccactgaccctgacggagacgagaacgggcgcttggagtaccgcgtg
gcagatggagatcctgagcaggatttcatcttagaccctgtctctggtgtgctctccact
gcacgtgccctcgaccgagagcaagttgctttctacagcctcacagtagtggttcaagac
cacggcaccccaccacgcagtgcaaccatgtcagtgaatgtgcaggtgttggacttaaat
gacaacgctcctggttttgctcaagccagctacgtggtggaggtgcccgaggacttgcct
gttggctccctggtgctgcagctggaagccaaggaccccgatgagggcaccaacgggcag
gtcacctactacctgggcaacgagtccctgggcatgttccaggtggagccgcagagcgga
cgcatcacaagtgcccaggagttggaccgggaacgccagccgacttacagctttctggcc
aaggccgtggactcagcaccgtgggagcccaaaagcgcggctgtgcgtgtcacggtcacg
gtgcgggatgtcaatgaccacgctcctgccttcctgcacagcccgctcactgtcagcttg
tctcgccacacgccgctcaagcaagtcgtggccaccatgagggcggaggacagggatgcg
ggtgccaatgcctccattctgtatcgccttgccaccccgaactcggccttctcaatcaac
tcctacacaggggatatccagctgctgcagcccctgagctcactcagccagcgccagcgg
acactcttcgtcctggccacggacctggggcagccggcgctttcctccactggtgtggtg
gtgatccatgtgcaggaagagccctaccgggggctgcgctttccccggagcaccaatgaa
gtggtcctgccagaaaatgctgctccaggtactgctgtcgcaagcatccaagctgtgcac
atggggggctcttctgggcgcatcacatacagcatcatcagtggcaacgagaagaacgct
ttccttatccagcccagctcaggtgccatctcagttcaggactccagcagcctggatttt
gaggccagcccccggctgcgccttgtggtccaggcagagacaacggcttcctttggcttt
atggccataaacctcaacctgcaagatgtgaatgacaacttgccacgcttccagctgcag
aactacgtggcattcatctgggagtcccagagctatgactccccagttatccaggtccta
gcagatgatctggatcagggaatgaacgggcaggtgacttacgccatcaaccagtccctg
ccgatgacaggcttataccacatcgatcctcagagcggcaccatcaccactgctgccatc
ctggacagggagatctggtcccagacccgcttggtggtgacagcgatggacagagggaca
ccccctctcgtaggttctgctacgctgacagttgtggtgatggacatcaacgacaacagc
cccaccattccttttccctgggaggtgcgggtcccagaaaacatgctgcttggcacccag
atagcccagctgacggggaacgatgtggactcgggcccggcgctctcctacgccctcctg
ctggatggtgatgctgtgggaacgttcagtgtgctgcgctatgggggacgcatcgcgctg
acggggccgctggactacgagcagcgcagccgctacagcctcacactgcgagcctccgac
agccgccacgagaccgaggccaacctcaccgtcatcgtggaggacatgaatgacaacgct
ccagccttcagccaggccttctaccaggtgacgttgccagaacacactcctgcagggagc
atccttctcaccgtgagcgccactgacatggactcgggcagcaatggggagatcaccttc
cacctggccgtgcccagccttgacgttgcaattgaccccagcaacgggaccctgttcacc
atccgatcggtggaatttgatgccaaccagcccaccctggaactggtggtggaggcccgc
gaccacggctcccccagcctctcgtcttgggccacggttcagcttcaggtgcttgatgtg
aatgaccacagccccatcttccaggtgccacactacaacgccagcgtccctgaggacctg
cggccaggaaccactgtgctgacgctggacgcaggcgatgctgacctctcccgagagaac
gccggcttcgactacaccattgtcagtggcaacggtggcaatgccttccaggtggagagc
cgggtggcctgggcaggtgggcagctacgcacacagggtgcgttggtgcttgtggagccc
ttagatttcgaggccatcccggtctacaatctcaccgtggctgccttggaccggggcctg
ccgcagcgcagcaccacggtgcctgtgctcatcacggtgcaggacgtcaatgacaaccca
cctgtgttcgcccgagccgaataccgcacggcagtgagcgagagcacgcctcctggcaca
gagctgctccgtctgacggcccacgacgccgactcagggccccgcggccacgttcactac
accatcagctcaggtgaccagcacgggctcttccagatccatgagagcacaggtgccctg
tgcctggcacggcccctggaccgggagacgcaggcatcgcacgctcttgtggtgcaggcc
atggatgtgccaggcgggcacttcgctctggtgcctgtagccatcgaggtgaaggatgtc
aatgacaacaagccgtacttcccagtggaggtgctgagtgccagcatgcgggagaacctg
cctccgggcacgcttgtgaccaccctgcgtgccatcgacaccgacaccggggtgtttggg
gagctgcactacgcagttctggagcagccagtgggggggcctggtgtggcagagggccgg
gacgccttcgccatcaacagcagctctggggagctgcgttcccggctcaccttcgattat
gagcgagccaaagccttccagctcctcgtcagggccacggatgccggcaacgcctctgct
acggtgaccgtgcgggtgctggtgaccggggaggacgagtacgatcccatcttcctgagc
ccctccttcagctttgaggtccctgagggtgcccacaaagggcagagcattgggagggtc
ctggcaacagatgaggacgagggggccgacggtgtcgtgctgtacaacctggccaagccc
tcgccgtactttgccatcaaccaaactacaggcaccatttacctgcgggtggacagccag
ccccaggccggggccgggcgcaccaagagggagccccgtgagatgagcctggaggtgcag
gcgcgcagcccgctgccagcctcccgctcagcctctgcacaggtcaccatcgacgtcacg
cacacctccttcggcctggctccagacctcaacctgctgctggtggccgtggccgcctcg
ctgggcgtcgtggtcgtgctggctgctgtggccatcgtgctggcgctggtccgctcccgt
caccgccggagccacgagaagacggagggggaccggccgctggcccacgtgcagagcagc
tctctgcaaaagctgggccacgaggagccggcactccccggggctgagcacatctaccac
caagcgctgccggggtacgggggggagccagcggggccgtacacgcggggcggctccctg
gacccctcgcactccagtggcagaggctccgccgaggcagctgaggacgacgagatccgg
atgatcaacgagtacccacgcgtggccagcatcacagcgtccatgcaggagcacatttcg
gcccgcggccccgactccggcatccagcaggatgccgaccagctgtccgacatctcctgc
gagccggccgccctggagagctcccagtggttcaagagcaagaagggctccgggctgctg
ctcccagggcccacgtcgcagctgtaccgcgaggatgggggaggcagcgcctttctcggc
gtgcgctgcggcctcagcgtctcctcccagccccaggactacaccttcccagaggatggc
aagccctctgtggaaggctctctcaccgccatcgtggccagcgacgaggagctccgtggc
agctacaattgggattacctgctgaactggtgcccccagttccagccgctggccagcgtc
ttcacggagatcgcccgcctcaaggatgagagctccctgcgcaagcccttcccgaccaag
cccaaggcagagcccaagccccgcatcgaccccccacccctcatcacctctgtggcccac
ccgggcgccaagtccgtgccccccaagccgccagcaggcaggaccttcccgcacccatcg
tcgctgcgtcgctcgcccatcagccacgagggctccatctcgtcctccgccatgtcaccc
agtttctccccctcgctgtccccgctggccgcccgctcccctgtggtctctccctttggc
atctcacaggggccctccgcctccaccatcagcgccgagcactcactggagccctctgag
gaggccgagctcaggatttag
DBGET
integrated database retrieval system
