Tympanuchus pallidicinctus (lesser prairie-chicken): 128088866
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Entry
128088866 CDS
T08967
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03013
Nucleocytoplasmic transport
tpai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128088866 (UPF1)
03015 mRNA surveillance pathway
128088866 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128088866 (UPF1)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128088866 (UPF1)
5.6.2.5 RNA 5'-3' helicase
128088866 (UPF1)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128088866 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
128088866 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128088866
NCBI-ProteinID:
XP_052555702
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGAGQAGPGQAQG
APGAGQGPAGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacggccccagctcgcagaccctcaccttcctggacacagaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccaaaccccgcccggagccgggcaggcggggcccggccaggcccaaggc
gctccgggagcggggcagggccctgcaggccccatcgaggcccaggttaatggacctgat
ggcattctgcagaacggagcagtggatgataacgtcgctaaaaccagccagcttctggca
gagctgaactttgaagaagatgaagaagatacttactatacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttactgcaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgtcaaccatctggtg
agagcgaagtgcaaggaggtgactctccataaagatgggcctctaggagagactgtcctg
gaatgttacaactgcgggtgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgcaagtcagagcagtttaaaggat
ataaactgggacagttcacagtggcagcctcttatccaagatcgctgtttcctctcgtgg
ctggtaaagattccatctgagcaggagcagctgagagcacgtcagattacagctcagcag
atcaacaaactggaagaactctggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagagccacagcacgtcctgcttagatacgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaagcttaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaataagaaaaga
attgcttatttcactctgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtacaaaggagacctggcccctctgtggaaaggaatcggccatgttatc
aaagttcctgatagttctacagattatggtgatgagattgccatcgagctgaggagcagc
gttggagccccagtggaggttactcacaacttccaagtggattttgtgtggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcagtgtca
ggatacatctatcacaaactgttgggccacgaggtggaagatgttattattaaatgccag
ttgccaaagcgcttcacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggtactggaaaa
acagtgacatcagctaccattgtctatcatctggctagacagggcaatgggcctgtgtta
gtgtgtgctccaagtaacattgctgtagatcagttgacagagaagatccatcagactggt
ctgaaagtggttcggctgtgtgctaaaagccgtgaggcaattgactcacctgtatccttc
ttggcactgcataaccagatcagaaacatggatagcatgccagagcttcagaagctgcaa
caacttaaagatgaaactggagaactgtcatctgccgatgagaaacgctaccgtgcgctg
aaacgaacagcagagcgtgaattgctcatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaaggcttgcaaaaatgcagttccgctccattctgatcgatgaaagc
acccaggccactgagccagagtgcatggtgccagttgtgctgggagcaaagcagcttatt
cttgtaggtgaccactgccagctggggcctgttgtgatgtgtaagaaagctgccaaggca
ggcctgtctcagtccctgtttgagaggctggtggtgctggggattcgccccatccgcctg
caggtgcagtaccgcatgcacccggccctgagtgctttcccatccaacatcttctatgag
ggttcgctccagaatggtgtcactgcagctgaccgtgtgaagaaagggtttgatttccag
tggccgcagccagacaagccaatgtttttctatgttacacaagggcaggaagaaatcgcc
agctcaggcacctcttacttgaacagaacggaagctgccaacgtggagaagataactaca
aagcttctgaaagctggtgccaaacctgatcagattggcattattactccttatgaaggc
cagcgatcctatctggtgcagtacatgcagttcagtggttccttgcatacaaaactttac
caggaagtagaaattgcaagcgtggatgccttccaaggacgagagaaggactttattatc
ctgtcttgtgtgagggccaatgaacaccaagggataggatttctgaatgaccccaggcgt
cttaatgtggctcttacaagagcaaggtatggggtaattattgttgggaacccgaaagct
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggaaggaccactgaataacctccgggagagcctcatgcaattcagcaagccccgaaaa
cttgtcaacaccatcaacccaggcgcccgcttcatgaccactgccatgtatgatgcacgt
gaagctattattccaggatccgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgatcagtgcaggccccagccacgtcactgct
atgaacattcccatccccttcaacctcgtgatgcccccaatgcccccaccagggtacttc
gggcaggccaacggcccggctgcaggacgtggggcacccaaagggaagaccggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaacgagtcaatcaaaccttcccaatagc
caggcgagccaagacgtggtgtcccagcccttctcccagggtccactgactcaggggtat
atctccatgagtcagccatctcagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagttcaagtctcagattgacgtggcgctgtcacaggac
tccacctaccagggggaacgcgcgtatcaacatggcggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
