Tympanuchus pallidicinctus (lesser prairie-chicken): 128088874
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Entry
128088874 CDS
T08967
Symbol
USHBP1
Name
(RefSeq) harmonin-binding protein USHBP1 isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tpai03037
]
128088874 (USHBP1)
Cilium and associated proteins [BR:
tpai03037
]
Primary cilia and associated proteins
USH complex and associated proteins
128088874 (USHBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
DASH_Dam1
DUF842
Leu_zip
KLRAQ
Motif
Other DBs
NCBI-GeneID:
128088874
NCBI-ProteinID:
XP_052555715
LinkDB
All DBs
Position
Unknown
AA seq
745 aa
AA seq
DB search
MEEASGVTQKAQGASGPQSSFFVPISAKLHPAAASLHPNHTGTPSAHFDPQGQAGQSPCS
PLRLASERLDEDKGRDEDEDKDEDEDPAAAGDEQHITTLLASTNPHSTRHLPHKEEEEHS
GGTSSPRPDGRQPQGLDGTGPEAPRPDLFAALQHAVSSLERAVISRHRRTPAPPAEWAQV
GQRGHGQPQHHGGGHCPTALCLQSLEELQRVAGTWQGLERGEGLLEAAARNAALLEALGH
RDEELSRTTEALQALQGERERLQGKVWELQEALARLEGMGGAGGDAVGLGSAPRLGDPQD
LSGCLLSYDEAQHQSAQPHSPLSPLPSEGASQELEDRMQQLQGHMERLKEVNQQLSAALH
DCKSDSERLSMVLGQHESRSSALRLALQCSERCVDAYAALLERMWAKLGRDGHGPNDGAM
GKQSADYGCGPSPTQSLQLPGQAEPKDSGVSSCPRLHRYPIPIPKVSQHPTPTSLPLHPC
PHSAHGSEEGALREAIRQLRAEQAAVQVSLSHVPMPTRAPSRCGEDIRARAERALQDARA
LLPGWRRPERAELLREIAELKEAMAELRMRLQLAEKEKRGLEVLAAAQGPREAALRLVLQ
HMEREQGAHSPSSSSSSSEEDAPMGAAAPQRPADPERTAQELQRALARIEQLHARAQALV
LSLEQSSAVSRAQHQKCIAVTRESFHAHSALALAYRSARHKQAAQLQHLEARAGAVQQQQ
AQRVQALARRLQALEQRRAGGETCI
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggcgagtggggtgacccagaaggcacagggtgcttcaggtccccagagctca
ttttttgtccccatctctgccaaactgcatccggcagcagcctcactgcaccccaaccac
acaggcaccccctctgcacattttgacccccagggccaggctgggcagagcccctgctcc
ccactgcgtcttgcaagcgagcggctggacgaggacaagggcagggatgaggacgaggac
aaggatgaagatgaggacccagctgcggcaggggacgagcagcacatcaccacgctgctg
gccagcacaaacccccacagcactcggcatctgccccataaggaggaagaagagcactcg
gggggcaccagcagcccccgccccgatgggcggcagcctcaagggctcgatggcactggg
ccggaagccccccgccccgacctctttgctgccctgcagcacgccgtcagctcgttggaa
cgcgccgtcatctcccggcatcggcgcacgccggcaccgccagcagagtgggcacaggtg
gggcagcgcggccatggacagccccaacaccacgggggtgggcactgccccacggccttg
tgcctccagagcctggaggagctgcagcgcgtggcggggacgtggcagggcctggagagg
ggcgaggggctgctggaggcggcggcgaggaacgcggcgctgctggaggcgctggggcac
cgcgacgaggagctgagccgcaccacggaggcactgcaggcgttgcagggggagcgcgag
cggctgcaggggaaggtgtgggagctgcaggaggctctggccaggctggaaggaatgggt
ggtgctgggggtgacgccgtggggctcggcagtgctccaagactgggggacccccaggac
ttgtccggctgcctcctgagctacgacgaagctcagcaccaaagcgctcagccccacagc
ccgctctcccccctgccctcagaaggtgccagccaggagctggaggacaggatgcaacag
ctacaggggcacatggagaggctgaaggaggtgaaccagcagctctcggctgccctgcac
gactgcaagagcgattcggagcggctcagcatggtgctggggcagcacgagtcacgcagc
agcgcgctgcgcctggcactgcaatgcagtgagcgctgcgtggacgcctatgctgcactg
ctggaacggatgtgggcgaagctgggcagggatgggcacggccccaacgatggagccatg
gggaagcagagcgcagattatggctgtgggcccagccccacacagagcctgcagctcccg
ggccaagcagagccgaaggacagcggggtcagctcctgccccaggctgcacaggtacccc
attcccatccccaaggtgtcccagcaccctacgcccacctcactgccccttcatccctgt
ccacacagcgcccacgggtcagaggagggggccctgcgtgaggccatccggcagctgcgt
gccgagcaggcggccgtgcaggtgtccctgagccatgtccccatgcccacccgcgcccca
tcccgctgtggtgaggacatccgtgcccgtgctgagcgtgctctgcaggatgctcgtgcc
ctcctgcctggctggaggcggccagagagagcggagctgctgcgggagatcgcggagctg
aaggaggccatggccgagctgaggatgcggctgcagttggcagagaaggagaagaggggc
ttggaagtgctggcggctgcacagggcccacgggaggcagcgctgcgcctggtgctgcag
cacatggagcgggagcagggggctcacagcccctccagcagctccagcagcagcgaggag
gatgctccgatgggagcagcagcaccgcagcgccctgcggacccggagaggacggcgcag
gagctgcagcgtgctttggcacgcatcgagcagctgcacgcccgagcgcaggccctggtg
ctgtccctggagcagagcagtgctgtcagccgtgcgcagcaccagaagtgcatcgccgtc
accagagagtccttccatgctcacagcgctctggccctggcgtaccgcagcgcccggcac
aagcaggcagcacagctgcagcacctggaggcacgggcaggagccgtgcagcagcagcag
gcgcagcgcgtgcaggcattggcacgacggctgcaggccttggagcagcgcagggctggc
ggcgagacctgcatttag
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