Tympanuchus pallidicinctus (lesser prairie-chicken): 128089022
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Entry
128089022 CDS
T08967
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03013
Nucleocytoplasmic transport
tpai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128089022 (CASC3)
03015 mRNA surveillance pathway
128089022 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128089022 (CASC3)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128089022 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
128089022
NCBI-ProteinID:
XP_052555986
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MADRRRQRASQDSEDDSDSAASDSGDSAASPARSRSGSASPRPSHRPPRGAAGALSAGPR
GRGAESAAGGGAAKSAPQSECESEDGIEGDAVLSDYESAEDSEAEEEDYSEEESAKVELK
QDSNDSCESAAKAEKGDEKLDSKGAVTGERQSGDGQESTEPVENKVGKKAPKHLDDDEDR
KNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKTRQEL
IALYGYDIRSAHNPDDIRPRRMRKPRFGSPQRDPNWSNERPNKPPRHQGSDGTSAAPRTF
TSRSSAGTGRMPPPRNYPRVGGYKETRPGYRASEAGVQHPARNGEQSKQESGYRAKRAEQ
SPPREKSPEVEAGHVHGSPVKEEGALENQTDAVQPPPDRPIEKKSYSRARRTRVKAGDAG
KLADDVPALEAPATPKPVQAEASPPPAKSSNWESPVESSLDGLEQEMIQMNLTEQNWSPG
QSQFLQPRELRGIPNHLHVGTGPPPQFNRMEEMAVQGGRAKRYSSQRQRPPVPEPAPPMH
ISIMEGHYYDPLQFQGPIYTHSENPAPLPPQGMIVQPEMHLPHPGLHPHQPAAPMANPGL
YPPPVSMPPGQPPPQQLLAPTYFSPPGVMNFGNPGYPYPPGALPPPPPPHLYSNTQQAQS
QVFGGVTYYNPVQQQVQPKPSPPRRTSQPVTIKPPPPEDSKGEKVKERSGT
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacgactcggactcggcc
gcctccgacagcggcgactccgccgccagtcccgcccgctcccgctccggctccgcttcg
ccgcggccttcgcaccgccctccgcgaggcgccgccggagctctgagcgccggaccgcgg
ggccgcggggccgaaagcgccgccgggggaggggcggccaaaagcgctccgcaatccgag
tgtgaaagcgaggacggcatcgaaggcgatgctgtgctgtcagattatgaaagcgcagag
gactcggaggcagaggaagaggattacagcgaggaagaaagtgccaaagtggaactgaag
caggatagcaatgattcctgtgagtctgcagcaaaagcggagaaaggggatgagaaactg
gactcgaaaggcgccgtaaccggtgaaaggcaaagtggggacgggcaggagagcaccgaa
cccgttgagaataaagttgggaaaaaagctcccaagcacctggacgacgacgaggatcgg
aagaacccggcttacatcccacgcaaagggctcttctttgagcacgatctccgagggcag
acgcaggaggaggaggtcaggccgaagggtcggcagcggaagctgtggaaggacgagggc
cgctgggagcacgacaagttccgggaggacgagcaggcccccaaaaccaggcaggagctg
attgctctgtatggctacgacatccgctccgctcacaaccctgacgacatcaggccgagg
aggatgcgcaaaccgaggtttgggagcccccagcgagacccgaactggtccaacgagcgg
cccaacaagcccccgcggcaccagggctccgacggcacttctgctgccccacgaaccttc
accagcaggagctctgcgggaacaggcaggatgccccctcccaggaactacccgagggtg
gggggctacaaggaaacccgcccaggataccgagcttcagaagccggcgtgcagcacccg
gcccgaaatggtgagcagagcaaacaggagagcggctatcgagcgaagcgcgcggagcag
agcccaccgagagagaagtcaccagaagtggaagcagggcacgtccacggcagccccgtc
aaggaggagggcgccctggaaaaccagaccgacgccgtgcagccgccgccagacagacca
atagaaaagaagtcttattcccgggcaaggaggaccagagtcaaagctggggacgcgggg
aagctggcggatgacgtccctgctctggaagctcccgcgacaccaaaacccgtccaagct
gaggcgtcccccccgccggcaaagagcagcaactgggagtcgccagtggaatccagcttg
gatggacttgagcaggagatgattcagatgaatctgacggagcagaactggagcccgggg
caatctcagttcttacagccccgggagctgcggggtattcccaaccatctgcacgtggga
actgggccgccccctcagttcaacaggatggaggaaatggcggtgcagggcggccgtgcc
aagcgctactcctcgcagcggcagagacccccagtgccagagccggccccccccatgcac
atcagcatcatggaggggcactactacgacccactacaattccagggaccaatctacacc
cacagtgagaacccggccccgctgccgccccaggggatgatcgtgcagccagaaatgcac
ctccctcatccaggtttacatccccaccagccagcagccccgatggcaaaccctggcctc
taccccccgccggtctccatgcccccagggcagcccccgccgcagcagctgctcgccccg
acttacttctccccgcctggagtcatgaattttgggaatcctggctacccgtaccccccg
ggagcgctgcccccgccgccccctccgcacctctattccaacacccagcaggcgcagtcc
caggtgttcgggggggtcacgtactacaaccctgtccagcagcaagtgcagcccaaaccc
tcaccgccgcggaggacgtcgcagcccgtcaccatcaagccgccgcctcccgaggacagc
aaaggtgagaaggtgaaggagaggagcggcacgtag
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