Tympanuchus pallidicinctus (lesser prairie-chicken): 128089390
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Entry
128089390 CDS
T08967
Symbol
VPS13A
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128089390 (VPS13A)
Membrane trafficking [BR:
tpai04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
128089390 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
128089390
NCBI-ProteinID:
XP_052556705
LinkDB
All DBs
Position
Unknown
AA seq
3205 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEAKQLMEARQRELQRIEE
AKQKIAEQDQVKEEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDITNRSNPLSFGISLQ
NLSLQTSDKNWNPCLHDESAKLFYKLVRLDNLFAYWNVKSEMFYHYGYNESLVSLKQGVA
CRNVIPVGYDFVFRPISAEAKLLMNPRSDIDFSTPKMDLDINIKDIAVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKIWWKYVIYGILEVNVQRKLQMWSWEHIRHHRN
QVKNYKELYRTKIISKKPNEEILKSLEEFEKVLDIFNITLARQQAEVEATKSGCKIYKPG
TKQDDENSGGWFSWIWGWSREDKDEQKQEVKASSLGGLMTSEEKAKLYAAIGYSETAVDP
TLPKSYEAMKLSVNLKSMSASIRENNQTPELVKFSLNELSTVFTQRPGAQAIRFETKITS
LEVTGVCQENCTPCLLSSRTVYSDNSTSLLSIMFETNPLDEGADQRLRIESQPLEIIYDA
RTINSLVDFFRTPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYDCTSNLLLLDLGSLKMKSKSRSDISGLKVGQSSIEDIMSRAYDSFDIQLTS
IQLLYSKHDENWQEARKLKYSSQHILQPLDVKVEFGRAMVVTDARMPKFKLSGQLPLLSV
QISDQKLKSILELVDSIPKAESTPATSSPPKITEAAISPVLSAPHLSQLPVLDLHSFAES
ESEEEFYDALSSPVEDVPFFESPSGSLKRASSTRRKKLNKQESLKNMTELQLRFEVAEVL
IKLCRLTDNTETPVLQLEVVGLGTELKLRTFDMTASAFLHEICLLCPEYMDDNEKPVYLV
TTLDNVEDDLLTLEYTKADINGPELKTAYQNVLQKIKVNFSSLDVHLHTETLLNAVNYLN
SLLPKQETKVAEETVHEKTEDKKDVLKKLTSKKSKYEDVIDLNIWADLSCLRVFIREKKH
RIAEIHIEGLDSQVIMKKTATEITAKLKNIVIVDSDEMALYNKALYITGKEVFNFKMISY
VNATDGIAYTNMDVVDNRVYLTVGCIQVVFVNKFFSSILAFINNFQAAKEALTEATVQAA
EKAATGVKELAEHSSRLALDINIKAPVVIIPQSAVSANVLVADLGLITVKNRFFIAKTKT
RYNLPPVVDSMTVKLSELKLYRSCYDQNSLQTEVELLQPLNLEVAVERNLSAAWYNEVPD
IEISGRLKPMNLILSQEDITTILRTLNENIGESSGASPPSQELKDTTSRSDIRSTSEHSA
GVTVVTSAVVELHSPVKIKTTLKLDFRFDSLTLVLYNSNSKQGTNLDQRDDLLKLAEFKL
LLMSAAVKMLSDGSMNASVKLANCTLDDERQAIHKATPRMMEMKHGFEKKVMMDISYKQG
RDGTVLDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLRQSLPLKEQAPLQPVSM
MEMNIIVKNPEIVFVADLTRSDAPALVVTAQCEVFIKNSPERYSMTAAVKEIQVKACPFL
PEKRKGNVTTVLQPCDFFFEMKQTGNNPQSADLMIKSLTVKVSPIIINTVITITSALYRT
AETTEEEISEIPPGLWNMKDLKDLKLWFLEESNESEDTNPITELVPTGQLLKMSIESVVL
TLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLHSQLELEVHYFNEMFGVWEPLLEPLEI
EKTDLFKPWVLEIKMKKKAKKALVESDAEEENYKVPEYKTVISVSSKDQLNITLSKCGLQ
MLSNLGTAFAEAASQTSDIFKKDRAPFVLINSLGLAITVLPSDSFSVLNVEFGAKIFDLK
DGDTLNMEYVRTKSESEQFTAMTTLSSKRFYIQICPHNHSTVEKIPLTKVGRCIYRVRHE
ESGVERSIVCQIDTVEGSKMITIRSPIQIRNHFSIPFTIFDEGRCLGTASPENEFNIPLS
SYRSKLSLLPIANENGVDGEYDMCEGITFDEIMKNVDSLLQRKCQSVRSTNQSFIINIVA
VKDTLTSSLCSDDEWDFPYVVHLWPSVLLHNLLPYHITYSVEGNGNKYDTLQDGCSAQIH
NAVLDQTKLELELLNYLDQNWKSEYHIKSNLPDISFTTFYCITELDKTELDIAVHVTYTT
GQMVIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDCKKPLLFSFQPKNFLQNNKVQLMVT
DSELSDQFSLDTVGSHGSVKCKSHKKDYQVGVTINNSSFNITRIVTFTPFFMISNRSKYT
LEVAEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPENDANKLLVRVENSNLPPKKINF
DKQENCLLLHLDNKLGGITVDVNLTEHSTVITFSDYHDGAAPFLLINHTEEEIIEYGQSS
LRELEGCLQPNKAVLYTWADPAGSRKLTWKCGKRTEEITPKEDKIEVLSLDCRKVVYLVS
FFEGLQRIVLITEDKNVFKLAYESVQAELAEQEIILSLQDVGISLVNNYTRQEVSYIGIT
SSDVVWETKPKKKSRWKPLSVKQTDKLEQEFKEYSELTPSENKTVELEPNVLVCLTPTGN
DMKIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKP
PKSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLNALVEFFTQT
DVPNVQQLELFKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSN
KEERKRELIPLQSLNLLLKSIGASLTDVQDVVFKLAFFELSYHFCTTQQLQSAVTKHYSK
QAIKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALV
GGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSG
FVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADS
SEDVVSLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMV
TKSGVLFVTKGTFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKII
NFRSPEDAKWILAKLEEVRENRPKS
NT seq
9618 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgaatcgctggtggtggacgtcctgaaccgcttcctcggagactacgtggtg
aacctagacagctcccagctgaagttgggcatctggggaggagctgtagcgctgaaaaat
cttgaaataaaagaaaatgcactgagtcaactggatgtgccatttaaagttaaagcagga
catattggtcaacttaacctacagattccatggcaaaacctttatactcaacctgttgag
gcagttcttgatggagtttatttgcttattgtgcccacagccagcataaaatatgatgct
gaaaaagaggccaagcagctcatggaggcaaggcaaagggaattgcaaaggatagaggaa
gcaaagcagaaaatagctgagcaagatcaagtgaaagaagagaaacaagacacttttgta
gaaaaactagtcactcaggtcatcaaaaatcttcaagtgaaaatttccaacatccacatt
cgctatgaggatgatatcacaaatcgaagtaaccccttgtcatttgggatttcacttcag
aacctaagtttgcagacctcagacaagaattggaatccatgtttacatgatgaatctgcc
aagttgttctataagcttgtacgactggataacctttttgcttactggaatgtgaaatct
gagatgttctatcattatgggtataatgaatcgctggttagcttgaaacagggagttgcc
tgccgcaatgtgattccagttggttatgattttgtattccgtccaatttctgctgaggcc
aagcttcttatgaatcctcgatctgacattgacttctcaactccaaaaatggatctagat
ataaatataaaggacatagctgttgaattcaataagccacagtacttcagtgtcatggaa
cttcttgaatctattgatatgatgactcgaaatttgccgtataggaagtacaggcctgat
gttccactgcacaacaatgccaagatatggtggaaatatgttatttacggcatccttgaa
gtaaatgttcaacgtaagctccaaatgtggtcatgggaacatattcggcatcataggaat
caagtgaagaactacaaggagttgtatagaacaaagataatatcaaaaaaacctaatgaa
gaaatcttaaaatctttagaggagtttgaaaaggtcctggatatttttaacatcacactt
gcaaggcaacaagcagaagttgaggccactaaatctgggtgcaaaatatacaaaccagga
acaaaacaagatgatgaaaattctggtggctggtttagttggatatggggctggtcacgg
gaagataaggatgaacagaaacaagaagtaaaggcttcaagtcttggaggtcttatgacg
agtgaagagaaagctaaactatatgcagcaattggatatagtgaaacggctgtggaccca
acgcttccaaaatcatatgaagccatgaagttgtctgtaaatttaaaaagcatgtcagca
tcaataagagaaaacaaccaaactcctgagttggtaaaattttctttaaatgaactgagt
acagtatttacacaacgacctggtgcacaagcaataagatttgaaaccaaaataacttca
cttgaagttacaggtgtgtgccaagaaaactgtacgccctgtcttctgtcttctcgaaca
gtctattcagacaatagtacctcactcttaagcataatgtttgagactaatcctttggat
gagggggcagatcagaggcttagaatagaatcacagccactggaaattatatacgatgca
agaacaataaacagcttggtggatttcttcaggaccccaaaagatgtacatttagagcaa
ctgacatctgcaactctgatgaagcttgaagagtttcgtgaaaaaacatcaacagggttg
ttgtatgttattgagacccagaaagttcttgatctcaaaattaacctcatggcttcatac
atcattgttccacaaaagggattctatgactgtacctctaatctacttcttttggatctt
ggtagtcttaagatgaaaagcaaaagtcgttccgatatatcaggacttaaggtgggacaa
agcagtattgaagatataatgtcaagagcttatgacagttttgatatccaactcaccagt
atacaactactctacagcaaacatgatgagaactggcaggaggctcgcaagctgaaatac
tcatctcaacatatcttgcagcctctggatgtgaaagtggaatttggtagggctatggtt
gtcactgatgcaagaatgcccaagttcaagctgtctggacagttgcctttactttctgtc
caaatatcagaccaaaagctgaaaagcatcttggagctagttgatagcattcctaaagca
gaaagtactcctgctaccagctctccaccaaaaataactgaggctgcaatatcgcctgtg
ctttctgcaccacatttatcacagcttcctgttctggatcttcattcatttgcagagtca
gaatcagaagaagaattttatgatgctctaagcagtcctgtggaagatgtgccatttttt
gaaagtccatctggatccctcaaacgagctagcagcacaagacgaaaaaaactaaataaa
caagaatctttgaaaaatatgactgaactccagctgaggtttgaagtagcagaggtctta
ataaaattatgtcgtcttactgacaatactgagactccagtgctgcagcttgaggttgta
gggttaggcactgaacttaaattaagaacatttgacatgactgcaagtgctttcctgcat
gaaatttgcctactgtgtccagagtatatggatgataatgagaaaccagtttacttagtt
actactttggataatgtagaagatgatcttctcactctggagtacacaaaggctgatatt
aatggaccagaattgaagactgcctatcagaacgttctacagaaaataaaggtaaacttt
tcatctcttgatgttcatttgcatactgagactctcttgaatgctgtgaactatctgaat
agtcttctacccaaacaagaaactaaagttgcagaagagacggtccacgaaaaaacagag
gataaaaaggatgttcttaaaaaattaacatcaaaaaaatcaaagtacgaagatgttatc
gacctcaatatctgggcagatttatcctgtttgcgtgtctttattagagagaaaaaacac
agaatagctgaaattcacatcgaaggtctggatagccaagtgatcatgaaaaaaacggca
acagaaataactgcaaaacttaagaacattgttattgtggattctgatgagatggcactg
tataacaaggctctttatatcacaggaaaggaagtctttaacttcaaaatgatatcttac
gtaaatgctacagatggtattgcatacacaaatatggatgttgttgacaatcgtgtttac
ttaactgttggttgtattcaagtagtctttgtcaacaaattcttctcttctattttggct
tttataaataattttcaagctgccaaggaagctcttactgaggcaacagttcaagcagca
gagaaagcagctacaggtgtgaaagagctagcagagcatagttctcgtttggcactagat
atcaatattaaagcacctgttgtgataattccacaatcagcagtttctgcaaatgtcctg
gtggctgatcttggtctaatcactgtaaagaaccgattctttattgctaaaacaaagact
cgatataatctcccacctgttgttgactctatgacggtgaaattgagtgaactgaagtta
tacagatcatgctatgaccagaattctttgcaaactgaagtagagctgctgcaacctctc
aatctggaagtagctgttgaacgaaatttatctgctgcatggtataatgaggttcctgat
attgaaatatctggacgactcaagcctatgaatctaatactcagtcaggaggacattaca
acaatactgaggacacttaatgaaaatataggtgaaagctcaggtgcatcaccaccttct
caagaactgaaagatacaaccagtcgcagtgatatccgcagtacttcagagcactctgca
ggtgtaactgttgtgacatcagctgtggtggaattgcattcacctgtgaaaataaaaaca
acactaaaactggatttcagattcgactctttgactttagtgttatataattcaaattcc
aaacagggtacaaatttggatcagagagatgaccttttgaagcttgcagagtttaagtta
ctgttgatgtcagccgctgtgaaaatgttgtcagatggctcaatgaatgcttcagtcaag
ttagcaaactgtacattagatgatgaaagacaggcaatccacaaggctacaccgaggatg
atggaaatgaagcacggatttgaaaagaaagttatgatggatataagctataagcagggg
agagatggcacggttcttgatgtgattgttcaagagatatatctttgtgcaagcatggaa
tttctacttacagttgcagatatattcctaaaagctaatgcagaaagtgctgctgcacag
aggaatctcaggcagtccttacctttaaaagagcaagcacctctgcagcctgtttctatg
atggaaatgaacattattgttaaaaatccagaaattgtgtttgtggctgatttaacaaga
agtgatgctcctgctttggtagttacagcacagtgtgaggtcttcattaaaaatagccct
gaaaggtacagcatgacagctgctgttaaagagatacaagtgaaagcgtgcccatttctt
ccagaaaaaaggaaagggaatgtaactacggtattacagccttgcgacttcttctttgaa
atgaaacagactggtaataatccacagtcagctgatctaatgattaaatccctgacagta
aaagtttcaccaataatcataaatacggtaataacgattacctccgccctttatcgaact
gcagaaacaacagaagaagagattagtgaaattcctccgggcttgtggaatatgaaagac
ttaaaagatctaaaattgtggtttcttgaagagtcaaatgaaagtgaagacacaaatcca
atcactgaactggttcccacagggcagttactgaaaatgagtatagaatctgttgttctt
acacttgaagctggggttgggcacagaactgtaccaatgctcttagccaagtcctcgttt
ctaggagaagtcaaaaactggagtaccctcatcaacctacattctcagcttgagctagag
gtgcactattttaatgagatgtttggagtttgggaacctttacttgagccactagaaata
gagaagactgacttatttaaaccatgggttcttgaaatcaagatgaagaagaaagctaaa
aaagcattagttgaatcagatgcagaagaagaaaactataaagttccagaatataaaaca
gtaataagcgtttcctcaaaagaccagctgaatattacattatccaaatgtggactgcaa
atgttgagtaacttgggaacggcatttgctgaagcagctagtcaaacttcagatatcttc
aaaaaagaccgagcgccatttgtactaataaattctttgggacttgccatcactgtcttg
cctagtgattctttcagtgtcctcaatgttgaatttggagcaaaaatatttgatttaaaa
gatggagatactttaaatatggaatatgtcagaactaaaagtgagagtgaacagttcaca
gcaatgacaaccctgagtagcaaaaggttttatattcagatctgtccacataatcattct
actgtcgagaagattccgctgaccaaagtgggtcggtgtatttacagagtgagacatgag
gagtcaggtgttgaaaggtccattgtctgccaaattgatactgttgaaggaagcaagatg
ataactattcgttctcctatccagataaggaatcatttttcaatccctttcacaattttt
gatgaaggaagatgtctagggactgcatcgccagagaatgaattcaacataccattgtcc
tcatacagatcaaaactgagtttgctacccatagcaaatgaaaatggagtggatggagaa
tatgatatgtgtgaaggaattacttttgacgaaattatgaaaaatgttgacagcttatta
caaaggaaatgccagtctgtgaggtcgactaatcaatcatttatcatcaatattgttgct
gtaaaagacacattgacatcttcattatgttcagatgatgagtgggattttccatatgtc
gtacatttatggccttctgtgcttctccacaatcttcttccttatcacataacttactct
gtagagggaaatgggaacaaatatgacactctgcaagatggatgttcagcccagattcat
aatgcagtcttggatcaaacaaaactagagttagagctgcttaattatcttgatcaaaac
tggaaaagcgagtaccatataaagagtaacttaccagatatcagcttcacaacattttac
tgcatcacagagttggataagactgagctggacattgctgtccatgtgacgtacacaact
gggcaaatggttatagcaattcacagcccatactggatggtaaataaaactggtcgaatg
ttgcagtacaaagctgatggcattcaccgcaagcatcctccagattgcaaaaagccgctg
ctgttttctttccagcccaaaaacttcctccaaaataacaaggttcaacttatggtaacg
gacagtgagctgtctgatcagttttcactggacactgttggaagtcatggttcagtgaaa
tgcaagagtcataaaaaagattatcaagtcggtgtcactataaacaacagcagtttcaat
attactagaattgtaactttcactccattttttatgatctcaaatagaagcaaatacact
ttggaagtagctgaagaaggcaaggaaaagtggataccaattgttttgcaacagtggtgt
gagaaacaatgggaaagggaacttagtggcatgtgtattcccttttggcctgaaaatgat
gccaacaaactgcttgttagagttgaaaattcaaatctcccaccaaagaagataaatttt
gataagcaagaaaactgtcttttactgcatttagacaacaagcttggagggattacagtg
gatgtcaacttgactgaacattctacagtgattaccttttctgattaccatgatggtgca
gcaccatttctgttaataaaccatactgaagaagaaattattgagtatggacaaagttcc
ctcagagaattagaaggctgtcttcagccgaacaaggcagtgttgtatacttgggcagac
ccagctggctctagaaaattgacatggaaatgtggaaaaagaactgaggaaatcacacca
aaagaagacaaaatagaagtcctcagcctggactgtagaaaggtggtctatttagtgtca
ttttttgaaggtctgcagcgtattgtcctaattactgaagacaagaacgtatttaaattg
gcttatgaaagtgtacaggcagaactagcagaacaagaaattattctgtctttacaagat
gttggaatttcattggttaataattacacaaggcaggaggtgtcatacataggaattaca
agttctgatgtggtctgggagacgaaacccaaaaagaagtctagatggaaaccattgagt
gttaagcaaacagataagctagagcaagaattcaaagaatacagtgagctaactccatca
gaaaataagactgttgaattggaaccgaatgttttggtgtgtttaactcctactggaaat
gacatgaagattcaacaacccaatgagattcctatcagaaggaattacttgccagctttg
aaagtggaatacagctcatcagcacatcagaaatctttcagaattcaaatttacaggata
caaattcaaaaccagattcctggagccatatttccctttgtgttctatcctattaaacct
ccaaagtccatcaccttggattcagcaccaaaaccatttactgatgtcagtattgttatg
agaactgcaggacattcacaaatatctcatattaaatactttaaggtcctgattcaagag
atggatctcagattagaccttggctttctgaatgcgctggttgaattttttacacagact
gatgtaccgaatgtccaacagctggaacttttcaaaaaggatgtagaatctcttcaggaa
gaactgatgagtgtgtcatccatggatacatcacaaatcagcttgtatgaatacttccat
atctctccaattaagttacacttaagcttttcactcagtactggtggtgaagatagtaac
aaagaagaaaggaagagagaactgataccacttcagtccttgaatctccttctgaagagc
ataggtgcctccctcacagatgtgcaagatgttgtctttaagttggcattctttgaactc
agttatcacttctgtactacgcagcagctccaatcagcagtgacaaagcattactcaaaa
caggctattaagcagatgtatgttcttattcttggtcttgatgtcttgggcaatccattt
ggattcataagaggcttatccgaaggagtagaagcatttttctatgaaccttatcaggga
gccatccagggtcctgaagaatttatagaaggaatggcgctaggacttaaagcactagta
gggggagctgttggtggattagcaggtgctgcttcaagaatcactggtgctatggcaaaa
ggtgttgctgcaataactatggatgaggattaccagcaaaaaaggagagaagccatgaat
aaacagcccactggtctgagagagggtatcactcgtggaggaaaaggattagtttccggt
tttgtcagtggcataaccggaatagttacaaaaccaataagaggagctcagaaagaagga
gcagctggttttttcaaaggtgttggaaaaggattggtgggagcagtagctaggcctact
ggaggaatcatagacatggcaagcagcacatttcagggtatcaaaaaagttgcagattca
tcagaagatgtggtaagcctacgcccacctcgcttctttggtgaagatggtgttattaga
ccttacagattaagagatggaaccggaagtcaaatgttacagaaaattgaaaatggaaga
tttgcaaaactcagatatattgcacatgctatggtcaacagtacagatctgttaatggtg
acaaagagtggcgtcttatttgtgacaaaagggacatttggacagttgacatgtgagtgg
caatacacttatgacgaatttacaaaagaaccattcattgttgatggcaggagattacgc
attgaagcaaaggaacgagtaaagtctgtgttccatgccaaagaatttggaaaaattatt
aacttcagaagtccagaagatgctaagtggatccttgctaaattggaagaagtgagagag
aatcggccaaaatcataa
DBGET
integrated database retrieval system
