Tympanuchus pallidicinctus (lesser prairie-chicken): 128089576
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Entry
128089576 CDS
T08967
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpai03021
]
128089576 (CHD1)
03036 Chromosome and associated proteins [BR:
tpai03036
]
128089576 (CHD1)
Transcription machinery [BR:
tpai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128089576 (CHD1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
128089576 (CHD1)
SLIK complex
128089576 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
Motif
Other DBs
NCBI-GeneID:
128089576
NCBI-ProteinID:
XP_052557094
LinkDB
All DBs
Position
Unknown
AA seq
1808 aa
AA seq
DB search
MNGHSDEESVRNSSGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGS
QSESESDTSREKKQVQAKPLKADGTEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSE
EDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDGDKSSCEESESDY
EPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLDSSEEEEDDDEDYDKRGSRRQATVNVSYK
EAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMDSRIGRKGATGASTTIYAVEADGDP
NAGFEKSKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWL
KNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSW
EDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRD
YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFL
GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK
QYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHL
IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN
FSNMDEDDIELEPERNSRNWEEIIPESQRRRIEEEERQKELEEIYMLPRMRNCAKQISFN
GSEGRRSRSRRYSGSDSDSITERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGG
PLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTFR
ISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLV
GIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQ
RLAGAGNSKRRKTRSKKNKIKASKIKEEIKSDSSPQPSEKTDEDDDEEDNKDEIVSVKHL
HKKIKTEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDNKEK
RENKVKESTQKEKEVKEEKVNEIKSENKEKCKKIPLLDTPVHITATSEPVPISEESEELD
QKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQ
IKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPDVE
RLKETTNHDDSSRDSYSSDRHLSQYYDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDHRDW
DHYKQDNRYYSDSKHRKLDDHRSRDHRSNLEGNLKDSRGHSDHRSHSDHRIHSDHRSTSE
YGHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKSTPE
HTWSSRKT
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaagaaacagcagtggagagtcaagcagatca
gatgatgattctgggtcagcttcgggttctggatctggttcaagctccggaagcagtagc
gatggaagtagcagccagtcaggtagcagtgactctgaatctggttcagagtcaggcagt
caatccgaatcggagtctgacacatctagagagaagaaacaagttcaagctaaacctctg
aaagctgatggaactgagttttggaagtccagtccaagtatacttgctgtacagagatca
gcagtgctcaagaagcaacagcaacaacaaaaggcagcatcatcagacagtggttcggaa
gaggactcatccagtagtgaagattctgccgatgattcatccagtgaaaccaagaagaaa
aagcataaagatgaagactggcaaatgtcagggtcagggtcagtatcaggaactggttct
gattctgaatcggaggaagatggggataaaagcagctgtgaagaaagtgaatctgactat
gagccaaaaaacaaagtcaaaagccgtaaacctccaagcagaattaagccaaaaagtggg
aaaaagagcacaggacagaagaagaggcaacttgattcatcagaggaggaagaggatgat
gatgaagattatgataaaagaggatctcgtcgccaggcaacagtgaacgttagttacaaa
gaagctgaagaaaccaagacagattctgatgatttgctggaagtttgtggagaagatgtc
ccacagactgaggaggatgaatttgaaactatagagaagtttatggacagtcgaattggc
cgaaaaggagccactggtgcctcaaccaccatctatgccgttgaggcagatggtgaccca
aatgctgggtttgaaaagtcaaaggagccaggagacatacagtatctcattaaatggaaa
ggctggtcacacatccataacacttgggaaactgaagaaacactgaagcaacaaaacgtt
aaaggaatgaagaaactggacaactacaagaaaaaggatcaggagacaaagcgatggctg
aaaaatgcttctccagaagatgtggaatattataactgccagcaagagcttacagatgat
ctgcataaacaatatcaaatagtggaaagaataattgctcattcaaatcaaaagtcagca
gctggctatccagactactattgcaaatggcagggtttaccttattcagaatgcagctgg
gaagatggtgctctcattgccaaaaagtttcaggcacgcattgatgagtattttagcaga
aatcaatccaagactactccctttaaagactgcaaggttctaaaacagagaccaagattt
gttgcactgaagaagcaaccatcttacattggaggacatgaaagtttggagttaagagat
tatcagttaaatggattgaattggctcgctcattcatggtgcaaagggaatagttgtatt
cttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctcaactacctg
tttcatgaacatcaactgtatgggccttttctactggtagtgccactttctaccttgaca
tcttggcaaagagagattcaaacttgggctcctcagatgaatgctgtagtttacttagga
gatataactagtagaaatatgataaggactcatgaatggatgcatccacagactaaacgt
ttaaagtttaacatacttctgacgacatatgaaattttactgaaggataagtcattcctt
ggtggtctcaattgggcattcataggagttgatgaagctcatcgtttaaaaaatgatgac
tctcttctgtacaagactttaatagactttaagtccaaccatcgacttcttattactgga
acccctctacaaaactccctcaaagagctgtggtctttgttgcatttcatcatgccagaa
aaattttcctcctgggaagattttgaagaggagcatggcaaaggaagagagtatggttat
gcaagtcttcacaaagagcttgaaccatttttactgagaagagttaaaaaagatgtagaa
aagtctttacctgctaaggttgagcaaattctgaggatggaaatgagtgcattgcagaag
caatattacaagtggattttaacacggaattataaagccctcagtaaaggttcaaaaggc
agtacctcaggctttctgaacattatgatggaacttaagaagtgttgcaaccattgctac
ctcattaaaccaccagatgataatgaattctataataaacaggaggccttgcagcatttg
atacgtagcagtgggaaactaatccttcttgacaaactactgattcggctgcgagaacgt
ggcaacagagttttgattttctctcagatggtgaggatgctggacatcctggcagaatat
ctaaagtaccgccagtttccctttcagagacttgatggatcaataaaaggggaattgagg
aagcaagcactggatcatttcaatgcagaaggatcagaggatttctgttttttactatct
accagagctggaggattaggtattaatttggcatctgctgacactgtagttatatttgat
tctgactggaatcctcagaacgatctgcaggcacaggcgagagctcatagaattggacag
aagaaacaggttaatatttatcggctagtaacaaaaggatcagtagaagaagatattctt
gaaagagccaagaaaaagatggtactagaccatttagtaattcagagaatggacacaaca
ggaaaaactgttctgcatacagggtctactccatcaagctctacaccttttaataaagaa
gagttatcagcaattttgaagtttggtgccgaggaactttttaaagaacctgaaggagaa
gaacaggagcctcaggaaatggatatagacgaaatcttgaagagagctgaaactcgggag
aacgagccaggtccattgaccgtaggggatgagttgctttcacagttcaaggtggcaaat
ttttccaatatggatgaagatgatattgagttggaaccagaaagaaattcaagaaattgg
gaagaaatcatcccagaatcccagcggagaagaatagaggaggaggaaagacaaaaagaa
cttgaagaaatatacatgctcccaaggatgagaaactgtgcaaaacagatcagctttaat
ggaagtgaaggaagacgtagtaggagcaggagatattctggatctgacagtgactccatc
acagaaagaaaaaggccaaaaaaacgtgggagacctcgaactattcctcgagaaaacatt
aaaggattcagtgatgcagagatcaggcggtttatcaagagttacaagaaatttggtggc
cctctggaaaggttagatgctgtagctagagatgctgagctagttgataaatctgagact
gaccttagacgtttgggtgagcttgtacataatggatgcattaaggctttaaaggacaat
tcatctggacaagaaagagcaggaggtagactggggaaggttaaaggcccaacatttcga
atctcaggagtgcaggtgaatgcaaaactcgtcatctctcacgaagaagagctggcaccc
ctgcacaaatccattccttcagatccagaagaaaggaaaagatatgtcatcccatgccac
accaaggctgctcactttgatatagattggggtaaagaagatgattccaatctgttagta
ggcatctatgaatatggctatggcagctgggaaatgataaaaatggatccagatctcagc
ttaacacagaagattttacctgatgatccagataagaaaccccaggcaaagcagctacag
acacgtgcagactacctcattaaattactgaataaagaccttgcaaggaaggaagcacaa
aggcttgctggtgcaggcaattccaagagaaggaagacaagaagtaagaagaataagata
aaggcttcaaaaataaaagaagaaataaaaagtgattcttcaccacaaccctcagaaaaa
actgatgaagatgatgatgaggaggataacaaggatgagattgtttcagtgaaacatcta
cataaaaaaataaaaacagaaaaagaaaatgaagaaaagcctgagccagatattggtata
aagaaggaagctgaagaaaaaagagagacaaaagagaaggaaaataaaagggatttgaaa
agggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaagataataaagaaaag
agagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagagaaggta
aatgagatcaaatctgaaaataaagaaaaatgtaaaaaaattccattactggatactcca
gttcatattactgcaaccagcgaaccagttcctatctcggaagaatctgaagaactggat
cagaagacttttagtgtgtgcaaagaaagaatgaggcctgtcaaagcagcactgaaacag
ctggatagaccagagaagggcctttctgaaagggagcagctggaacatactaggcagtgt
ctaatcaaaattggggatcacattacagaatgcctgaaggagtacacaaatccagagcaa
ataaaacagtggaggaaaaatttgtggatttttgtctccaagtttacagaatttgatgcc
agaaagctgcacaaactctacaaacatgcaatcaaaaagcgccaagagtctcagcagcat
aatgaccaaaacattagcagcaatgtgaatacacatgtaatcagaaatccagatgtggaa
agactgaaggagactacaaaccacgatgacagtagcagggatagttattcttctgataga
catttatcacagtactatgatcatcacaaagacaggcatcagggagatgcttataagaaa
agtgactctaggaaaaggccgtattcagccttcagtaatggaaaagatcacagagactgg
gatcactataaacaggacaacagatactacagtgatagtaaacatagaaagctagatgac
cacaggagcagagaccacagatcaaacctggaaggaaacttaaaagacagccggggtcat
tcagatcaccgctcccattcagaccacaggatacactcagaccaccgctccacttcagaa
tacggtcatcacaaatcttccagagattacagataccactcagactggcaaatggaccac
agagcttctggtagtggcccgaggtcaccactagatcagaggtctccttatggttcaagg
tctcccctaggacacagatctccatttgaacactcatcagatcacaaaagtacacctgaa
catacatggagtagccggaagacataa
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integrated database retrieval system
