Tympanuchus pallidicinctus (lesser prairie-chicken): 128089667
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Entry
128089667 CDS
T08967
Symbol
SHOC1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128089667 (SHOC1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Meiosis-specific proteins
Others
128089667 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
128089667
NCBI-ProteinID:
XP_052557277
LinkDB
All DBs
Position
Unknown
AA seq
1589 aa
AA seq
DB search
MEGFASVEEEMIRECLAKIKEYKSNVTPGLKKGKKEDPVNYRTVSLTSTPERWWSKFFQV
PSPNKCRKHHKTEKMFAALKYHSTDYLYESMARQKYSIRRLSLCFPPYFRQHEKYRLTGL
FAHDQYRRPWTRITSTQNMIAVSVLDQWKKSSYVEDFLEKKPISSIGFCVNNEVIASSNP
ISQIDTETYYLLEKVVCEEASTQEKYLKIDCATELKEQWQDLHVGDEFVFVDNLKNYHKK
LPNLSTLLGRLKFFCVRDPFLVSEGENLTEENIFRECLTSQNKIEMQESKNEFQGIMEDF
CKTTLEDKEYFVLPFELEFCKSSNSTSESNKIPSYLELKELLNLAPENMAFENMCEEVIK
EALKEKIANKMEVAKYCPISVVSSSNSISMLEISDTAKHISYLKDEMEVPLTPLCKQRRS
QVNFLCIGLQEELNPLFDNSILITEPSKEYLDSLVWQSEKYWDNVNSLLLVEYQSFKLEH
RHHSLTELKKMLSVDVETPMFMSLEKDWWLHVGLDLVCVDTLEQFKRDSNNTNSLFSTEV
ETFTQFSIRQLERWPEENNSMPDQELLSSERGQMDEVTDLCMSPQTKMQHFGLPINAASS
LKIDKTNTPLENVTGGNIQKRKIEEPVYFFNREEKIDISLVSVSCKDTPFKQHNSSEGQN
LTSFRLDSKWDNDDSDLNNFIMLRCKRTVTQTQEKKGVDHPEKVLQPEELHLSDHKEDSS
VCEPARTEKKEQVNDSSVIVKIQASESQCQSYCLLKGAATSALKDLTHLGVLASVSWSFD
SVKFDHTRFFLRQQEKVICDRFKEGKVDEKEIILFRHAALVHLLVTCRDLLLTCGLDTAL
GYLSKAKDIYKNILESCLNNTWRQLKIVQYSSQKKHESSPRLAELQCRLLDWMQTYAEEQ
SVKVMLKGCNEXTPQSSLLRDEQVQLLKSFFAGEVLQPSDHLCSPLLDSPQHLQVLVLGA
SDLDLVFKILIILRMDSEREKAVLIHTVSRLEGLKAIDLNSEKKGNILGYRDIVTNRYAC
VIIQNQNIGADFPWRLFSLVIEYDYSENSCWKKLCENLNIAYMTFKTILPETVQMGNHCG
SSLLEIQIPYVFLTTEGLLNMPDFLQLLESHYSITFVERSCSYSLRLLGDTDRYVVLTVD
ERTAIFLQNMDELNHEKSCDNVISKLIALSLQYTCCWVVFYSRERLSLEYSLSGDTLLSL
VLIYANLIEFTQKSEDFEVKVVLTPGIEEAALLIRQIADNILMTSSVSPHEWLDKSWLSV
LPSEMEKCLLAFPCINPLVAQLMLKKESSLNRLFLASYDQLQELLPEVPKKVLKHFSDIT
SSYSTNAAASLKTTVKRSSPPENWNIFKRLYPDCKQNSQSLELLAKAQTSTGPSHVNSEA
SFLPLKHNQSFINSDLSSYMHERPCFSEVAPERKQNFFVIPKGSEDFDRLNAMNSFYIKG
QAFRTHCISDHSSKNSEEDFFTTFSDCVPPDSSTAFLKEFRGTAFKSPEIQIYETPWNDF
SSTCTYNSFAPNLIHSDSLVDPDEIQILCFQNQDRELSGNRKQSPPFLWAKGKKIPDSGL
EEVPRIKKRRLMYERVPGRADGQTRLKFF
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctttgctagtgttgaggaggagatgatcagagagtgtctagccaaaatcaaa
gaatacaaatccaatgtcactccaggactcaaaaaaggcaagaaagaggatccggtaaac
tacaggacagtcagcctcacctccaccccggaaaggtggtggagcaagttcttccaggtg
ccatctccaaacaagtgtcggaaacatcacaaaacagaaaagatgtttgcagctttaaag
tatcactcaacagactatttatatgagagcatggcaaggcaaaagtattccatccgtaga
ttatcactttgctttcctccctatttccgacaacatgaaaagtatcgtctgactggactt
tttgctcatgatcagtataggaggccctggacaagaattacttcaacacagaacatgatt
gctgtttcagtgttggatcaatggaagaaaagttcgtatgtggaggatttcctggaaaag
aaacctatcagttctatagggttctgtgtcaataatgaagtaatagcaagctcaaatccc
atctctcagattgacacagaaacatattacttactcgagaaagttgtttgtgaggaagca
tcaactcaagagaaatatttgaagatcgactgtgctactgagcttaaggaacagtggcaa
gatctacatgttggagatgaatttgtttttgttgataatctgaaaaactatcataaaaaa
cttcctaatttatctacacttctgggcagacttaaatttttttgtgtgagagatcctttt
ttagtttctgaaggagagaatttaacagaagagaatattttcagggagtgtttgacttcc
caaaataaaatagaaatgcaggagagtaagaatgaatttcaaggaattatggaggacttc
tgtaaaacaacattagaagataaagagtatttcgtgttgccttttgagttagaattctgc
aaaagcagcaacagcacatcagagtccaataagattccatcatatttggaattgaaggag
ttactaaatttagctccagaaaatatggcttttgaaaatatgtgtgaagaggtaatcaaa
gaagctctcaaagaaaaaattgcgaacaaaatggaagttgccaaatactgtcctatttca
gtggttagctccagtaacagcataagtatgttggaaatctctgacacagccaagcacatc
tcatatctgaaagatgaaatggaagtacctttaactcctctatgcaaacaacgaagatca
caggtgaattttctctgcataggacttcaagaagaactgaatcctctttttgataacagt
attttgattacagagccctctaaggaatacttagactccttggtatggcaatcagagaag
tactgggataatgtgaactctcttttacttgtcgagtatcagagctttaaacttgaacat
cggcaccattctctcacagagctaaagaaaatgctgtcagttgatgtagaaacaccaatg
tttatgtcacttgaaaaggactggtggcttcacgtgggattagatctggtctgcgttgat
actttggagcaatttaagagggattccaataatacaaacagtttgttttctacagaagta
gaaacattcacacaattttctatacgtcagttagaaagatggcctgaagaaaataattct
atgccagatcaggaattgctttctagtgaaagaggtcagatggatgaagtaactgatctt
tgcatgtcacctcagaccaagatgcagcactttggcctgcctataaatgctgcgtcttct
ctcaaaatagacaaaacaaatacacctctggaaaatgttactggaggaaatatacaaaag
agaaagattgaagaacctgtttatttcttcaaccgagaagagaagatagacatatcactt
gtgtctgtcagttgtaaagatacaccttttaaacaacacaactcttctgagggtcaaaac
ctcacgtcgttcagacttgattcaaaatgggacaatgatgattctgatctgaacaacttt
ataatgctaaggtgcaaacgcacagtcactcaaacacaggaaaaaaaaggtgtagatcat
cctgaaaaagtgctacagcctgaagaactacatttatctgatcacaaagaagacagttct
gtttgtgagcctgcaagaacagagaaaaaagagcaagtgaatgacagcagtgtcatagtc
aaaattcaagcatcagaaagccagtgccagtcatattgtctgctgaagggagcagctact
tctgctttaaaagatttgactcatctgggtgtacttgcttctgtaagttggagctttgac
agcgttaagtttgatcacacaagatttttcctgagacaacaagagaaggtgatatgtgat
cgttttaaagaaggtaaagtagatgagaaagagatcatcctgttcaggcatgctgctctg
gtgcatctgctggtgacatgtcgagaccttctgttaacatgtggcttggacacagcacta
ggatatttgtctaaagcaaaggatatctataaaaacatcttagaatcctgtttgaataat
acctggaggcagctgaagattgtacagtacagcagccagaaaaagcatgaatccagtccg
agattagcagagcttcagtgtcgactgttagattggatgcaaacttatgcagaggaacag
agtgttaaggttatgctgaaaggttgtaatgagnngactccccagtcttctcttctccga
gatgaacaagtccagcttcttaaatctttctttgcaggagaggtgctccagccctctgac
cacctttgtagccctcttctggattcaccccaacatctccaagtccttgtgctgggggcc
tcagacttggacttggtattcaagatactaatcatactaagaatggactctgagagagaa
aaggcagttctcattcacactgtatctagactagaaggtttaaaagccattgatttgaat
tctgagaaaaaaggaaacattctgggatatagagatatcgtcaccaatagatacgcctgt
gttattatacaaaatcagaacattggagctgacttcccctggagactcttctcattagtg
atagaatatgattattctgaaaactcttgctggaaaaaactgtgtgaaaatctaaatatt
gcatacatgacttttaaaaccatcctccctgaaacagtacaaatgggaaatcactgtggt
tcttctcttctggagatacagattccttatgtgtttctcaccactgaaggtcttcttaat
atgccagattttcttcagcttttggaatctcactacagcattacttttgttgaaagaagc
tgcagttactccttgaggctacttggagatacagaccgatatgttgtgttgacagtagat
gaacgtacagctatcttcttgcagaatatggatgagttaaaccatgagaagtcctgcgac
aatgtaatatcaaagctgatagcattatcactccaatatacatgctgttgggttgttttc
tactccagagaaagactgagtttggagtacagtctcagcggagatactcttctcagcctt
gtcttaatttatgccaatttgatagaatttacacagaagtcagaagactttgaagtgaag
gtagttcttacaccagggattgaagaggcagcactgttaattcgtcaaatagctgacaac
attttgatgacatctagtgtcagtccccatgaatggctggacaaatcttggctttctgtc
ttgccatctgagatggagaaatgcttgcttgcttttccttgtatcaaccctctggttgct
cagctgatgctaaagaaggaatcttctttgaacaggctctttctggcaagctatgatcaa
cttcaggaattactaccagaggttccaaaaaaagttctaaagcattttagtgacattacc
tcttcgtacagcacaaatgctgctgcgtcactgaaaacaacagtgaaacgttcatcacct
ccagaaaactggaatatctttaaaagactctatccagattgtaagcaaaattctcagtct
ttagagttgctagctaaggcacaaaccagcacagggccatctcatgtgaattctgaagcc
tcgtttcttccattgaaacataatcaaagttttatcaactctgacctttcaagctatatg
catgagagaccatgtttttcagaagtagctccagagagaaaacagaatttctttgttata
ccaaagggcagtgaagattttgatcgtctaaatgctatgaattctttttacattaaaggt
caggcgttcaggacacactgtatctctgatcattcctccaaaaattctgaagaagatttc
tttacaactttcagtgactgtgtacctcctgacagctctacagcttttctgaaagaattt
agaggcacagcatttaagagcccagaaattcagatttatgagactccatggaatgacttt
tcatccacttgcacatacaattcatttgcacctaacttaattcattctgattcccttgtt
gatccagatgaaattcaaattctgtgtttccaaaaccaagatcgagaactttcaggaaac
agaaagcaaagtccaccattcttgtgggcaaaaggaaaaaaaataccagattcaggactt
gaagaagtaccaagaattaaaaagaggagattgatgtatgaaagagtacctggaagagct
gatggacaaacacgtcttaaattcttttga
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integrated database retrieval system
