Tympanuchus pallidicinctus (lesser prairie-chicken): 128090294
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Entry
128090294 CDS
T08967
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128090294 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128090294 (SKIC2)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128090294 (SKIC2)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128090294 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
128090294 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
Ski2_N
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
ResIII
Motif
Other DBs
NCBI-GeneID:
128090294
NCBI-ProteinID:
XP_052558488
LinkDB
All DBs
Position
Unknown
AA seq
1240 aa
AA seq
DB search
MELERIVLPPPGPLHLPLALLELGCAGRCELLPGPAPPRSTLPQGLPPFTPPLTAELEQR
FLQTPSWLPPHQHERAQRRWTRVPTPRALFVLEPTPVHSSVRALRDPGTGALQGFVEELH
EDAGLPSPPDTGDVPQWEGGLEEPPLELLHTQGPNEEDLDFENDLLTTPPGLKRGVEFQA
RAAPGARGGAPSLCSVLGALDSLELGGTEEEEKKEGEGAGGGAPSQQPADKGGLPSPTPP
LRRADSLEELVMGEVLVPPATATPPVPPQSEEEEWAVEEDCSVPVEDFEEKIPDPAFKWP
FRPDAFQQRAALCLERGQSLLVAAHTSAGKTAVAEYAIALARRHMTRAIYTSPIKALSNQ
KFRDFRATFGDVGLLTGDVQLRPDASCLIMTTEILRSMLYNGSEVLRELEWVIFDEVHYI
NDAERGVVWEETLILLPEHVGLVLLSATIPNALEFAQWVGRTKRRRLRVLSTRQRPVPLE
HFLYTGGGGAPSPRDLFLLLDARGAFSTQGYYAAVEAQKQRASKHAQSFGAKQPHGGGSG
PGQDRAMWHSLVALLQAQGQLPAVAFTFSRGRCDAHAAALGRTDLSSAAEKGRVRGFVRR
CLARLRGGDRRLPQVLQMSELLERGIGVHHSGVLPLLKEVVEMLFSQGLVKLLFATETFA
MGVNMPARTVIFDSIRKHDGNNFRDLLPGEYVQMSGRAGRRGLDRTGTVIILCRGTVPEM
ADLHRVMLGRPSGLQSQFRLTYGTILSLQRAAALSVEGLMRNSFGEFPLRRRAAAQQRRV
AELQQELAALGEPPQEGTLDDLPQYHEAVQGLLEARAELQRRVAQSVAGLKALAPGRVVV
VCTPQHRNALGLILQVTAESGGGRTITAMVLSEKPPEEGGPPPSPPPDAPYPEDVLLNRL
FLPEGPPGAALEQLHPEDLGGIVGRTLRANPPRLLEELRRRQTARGRKDPPSPELLSALQ
ELLRMAGAAAGGLPLLDPVGALQLRDPPAVEAAARARSLGAALGGFRCVHGPRFPQLYSQ
FAARRRLQAQVEQLQYQLSDRSLLLLPEYRQRLGVLQALGYVADGGAVQLPGRVAALLSC
HELLLTELLLGNVLSPLRPEEVAALLSCTVHPGRGEPPPKLPPNLQRGMEQIRAVAERVG
RLQEEWGLPQSAEDYVGQFGFGLAEVVYEWARGMPFAALAALAPLQEGAVVRCIQRLEEL
CRELRRAARMLGDPGLAATMEAASGCIKRDIVFAASLYIQ
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagcggatcgtgctgcccccccccgggcccctgcacctccccctggcactg
ttggaattgggctgcgccgggcgctgcgaattgctgccgggtcccgcccccccccgcagc
acgctcccccagggcctcccgcccttcactcctcccctgacagcggagttggagcagcgc
ttcctgcagaccccctcctggctgcccccccaccaacatgaacgggcccagaggcgctgg
acgcgggtgcccaccccccgcgcactgtttgtgttggagccgacgccggtgcacagcagc
gtgcgggcgctgcgggaccccggcacaggggctctgcagggctttgttgaggagctgcac
gaggacgcggggctcccctctcccccagacaccggcgacgtcccccagtgggaaggtggt
ttggaggaaccccccctggagttgctccacacccaggggccaaatgaagaggatttggac
tttgaaaatgatttactgaccacccccccagggctgaaacgcggtgttgagtttcaggcc
agagcagcccccggagcccgggggggggcaccgtcgctctgcagcgttttgggggcgttg
gattccttggagttgggggggacggaagaagaggagaaaaaagagggggagggtgctggg
gggggtgccccctctcagcagcctgctgacaaaggagggctgccttcccccacacccccc
ctgcgccgtgccgacagcctggaggagctggtgatgggggaggtgctggtgcccccagcc
acagccaccccccctgtgcccccgcaaagcgaggaggaggagtgggccgtggaggaggac
tgcagcgtccctgtggaggactttgaggagaagatcccagatccagcattcaagtggccg
ttccgccctgacgccttccagcagcgcgcggcgctgtgcctggagcgggggcagtcgctg
ctggtggctgctcacacctcagctggcaaaactgccgtggccgaatacgccatcgccttg
gcacggcgacacatgacacgggccatctacacgtcgcccatcaaggcgctctccaatcag
aagttccgcgacttcagggccacctttggggacgtggggctgctgactggggacgtgcag
ctgcgccccgacgcctcctgcctcatcatgaccactgagatcctgcgctcaatgctgtac
aacggctctgaggtgctccgtgagctggagtgggtcatcttcgacgaggtgcactacatc
aacgacgctgagcgcggcgtggtgtgggaggagacgctgatcctgctgcctgagcacgtg
gggctggtgctgctcagtgccaccatccccaatgccctggagttcgcccagtgggtcggc
cgcacgaagcggcgccgcctgcgggtgctgagcactcggcagcgcccggtgcccctcgag
catttcctctacaccggcggcggcggtgccccctcaccccgcgatctcttcctgctgctg
gacgcgcggggtgccttcagcacccaggggtactacgccgcggtggaggcgcagaagcag
cgggcgagcaaacacgcgcagagctttggggccaaacagccccacggggggggcagcggc
cccgggcaggaccgtgccatgtggcactcgctggtggcgctgctgcaggcgcaggggcag
ctcccggccgtggccttcaccttctcccgcgggcgctgtgatgcacacgcagccgccctg
ggccgcactgacctcagctcagccgccgagaagggacgcgtgcgcggcttcgtgcggcgc
tgcctggcccggctccgggggggggaccgacgcctgcctcaggtgctgcagatgtcggag
ctgctggaacgcggcatcggggtgcaccacagcggggtgctgccgctgctcaaggaggtg
gtggagatgctcttcagccaggggctggtcaagctgctctttgccaccgagaccttcgcc
atgggggtgaacatgccggcgcgcaccgtcatcttcgactccatccgcaaacacgatggc
aacaacttccgcgacctgctgccaggtgagtacgtgcagatgtcggggcgcgccgggcgc
cgtgggttggaccgcaccgggactgtcatcatcctgtgccgggggacggtgcccgaaatg
gccgacctgcaccgcgtgatgctgggccgcccgtcggggctgcagtcgcagttccgcctg
acgtacggcaccatcctcagcctgcagcgcgcggccgcgctcagcgtggaggggttgatg
cgcaacagcttcggagaattccccctgcggcgccgcgccgcggcgcagcagcggcgcgtg
gctgagctgcagcaggagctggcagcgctgggggagcccccgcaggagggaaccctggac
gacctcccccagtaccacgaggccgtgcaggggctgctggaggcgcgggcggagctgcag
cgccgcgtggcgcagtcagtggcagggctgaaggcgttggcccccgggcgggtggtggtg
gtctgcaccccccagcaccgcaatgcgctggggctcatcctgcaggtgactgctgaaagc
ggggggggccgcaccatcacagcgatggtgctgagtgagaaaccccccgaggaggggggg
ccgcccccctcgccccccccggatgccccctaccctgaggatgtgctgctgaatcggctc
ttcctgcctgagggcccccccggagcagcactggagcagctgcaccccgaggacttgggg
ggcattgtggggcgcacgctgcgggcaaaccccccccggctgctggaggagctgcggcgg
aggcagacagcgcggggaaggaaggacccccccagccccgagctgctctcagccctgcag
gagctgctgcgcatggcaggggcggctgcgggggggctgcccctgctggacccagtggga
gccctgcagctgcgggacccccctgccgtggaggcagctgcccgtgcccgaagcctgggg
gcggccctggggggctttcgctgcgtgcacggcccccgctttccccagctgtactcgcag
ttcgctgcgcggcgccggctgcaggcacaggtggagcagctccagtaccagctgtcggac
cgctccctgctgctgctgcccgagtaccggcagcgcctgggcgtgctgcaggctctgggc
tacgtggccgacggcggtgcggtgcagctccccggacgcgtggcggcgctgctgagctgc
cacgagctgctgctgaccgagctgctgctgggcaacgtgctgagcccgctgcgccccgag
gaggtggccgcgctgctgtcctgcaccgtgcatccgggccggggcgagccgcccccaaaa
ctgcctcccaacctgcagcggggcatggagcagatccgcgccgtggccgagcgcgtgggg
cggctgcaggaggagtgggggctgccccaaagcgccgaggactacgtggggcagttcggc
ttcgggctggccgaggtggtgtacgagtgggcgcgcggcatgcccttcgccgctctggcc
gccctggctccgctgcaggagggagcggtggttcgctgcattcagcgcctggaggagctg
tgccgggagctgcgccgcgccgcgcgcatgttgggcgacccggggctggcggccaccatg
gaggcggcgagcggctgcatcaaacgggacatcgtcttcgccgcgagtctctacattcaa
taa
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