Tympanuchus pallidicinctus (lesser prairie-chicken): 128090540
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Entry
128090540 CDS
T08967
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128090540 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128090540 (COPA)
Membrane trafficking [BR:
tpai04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
128090540 (COPA)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128090540 (COPA)
Exosomal proteins of bladder cancer cells
128090540 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
128090540
NCBI-ProteinID:
XP_052558897
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAENLKETFDP
EKETIPDIDPNAKLLQPPAPVMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDNV
GTEGWGEDAELQLDEDGFVDAGESFGEEGLGKGQEEGGGWEVEEDLDLPPELDVPAGPAG
GAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLFL
QTYARGRTTYQALPCLPTMYGYPHRNWKEAGLKNALPAVGLKLNDLIQRLQLCYQLTTAG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEH
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFQGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgttgactaaattcgagaccaaatcggctcgagtgaaagggctcagcttccaccccaag
aggccttggatcctcaccagcctacataatggcgtcatccagctgtgggactatcgcatg
tgcacccttatcgacaagttcgacgagcacgatggacctgttcgaggtattgatttccac
aagcagcagcctctgtttgtttctggaggtgatgactataaaataaaggtctggaactat
aaactgcgccgctgtcttttcactctgcttgggcatttggactacatccgcaccaccttc
ttccatcacgaatatccgtggatcttgagtgcttccgatgatcagaccattcgggtttgg
aactggcagtccagaacttgtgtctgtgtgctgacaggacacaaccactatgtgatgtgt
gcccagtttcacccctctgaggacctggtagtgtcagccagcttggatcagactgtacgc
gtgtgggatatttctggcttaagaaagaagaacctgtcccctggagctgtggagtcagat
gtcagaggaataactggggtggatttgtttgggacaacagatgcagttgtgaagcacgtt
cttgagggccatgatcgtggagtgaactgggctgccttccatcccacaatgccactgatt
gtgtcaggagctgatgatcgacaagtgaagatctggaggatgaatgaatcgaaggcctgg
gaggttgacacttgccgggggcattacaacaatgtctcgtgtgctgtctttcaccctcgg
caggagctgatcctcagcaattcagaggacaaaagcatccgtgtgtgggatatgtcaaaa
cgcacgggtgtccagaccttccgccgtgatcacgatcgcttttgggtattggctgctcat
cccaatctcaacctctttgctgcaggccatgatggtggcatgattgtgtttaaactggag
cgtgagcgtcctgcttatgcagtgcatgggaatatgctgtattatgtgaaggaccgattc
ctccgccagcttgactttaacagctcaaaagatgttgctgtcatgcagctgcgcagtggt
tccaagttccctgtgttcaacatgtcatacaacccagctgagaatgctgtccttctctgc
acaagagcaagcaacttggagaacagcacttacgacctatacaccattcccaaggatgca
gactcccagaatccagatgcccctgaagggaagcgctcctcggggctaacagctgtgtgg
gtagctcgtaaccgctttgcagtcctggatcgcatgcattcgatcctcatcaaaaacttg
aagaatgagatcacaaagaaggttcaggtgccgaactgtgatgagattttctatgctggc
acagggaacctgttactgagagatgcagactccatcaccctctttgacgtgcagcagaag
cggactctggcctcagtgaagatctccaaggtgaaatatgtcatctggtcagctgacatg
tcccacgtagctctgctggctaagcatgccatcatgatctgcaacagaaagctggaatca
ctgtgcaacatccatgaaaacatccgtgttaagagcggtgcctgggatgaaagtggtgtt
ttcatctataccaccagcaaccacatcaaatacgctgtcaccacaggggaccatggcatc
atccgcaccctggacctgcctatctatgttactcgtgtgaaggggaacaatgtgtactgc
ctggacagagaatgtcgccccagggtcctcaccattgatcctacagagttcaaattcaag
ctggcattgatcaacagaaagtatgatgaggtgttgcacatggtgaggaatgctaagctt
gtgggtcagtccatcattgcctacctgcagaaaaagggttatcctgaggtggccctgcac
tttgtgaaggatgagaagacccgtttcagtctggcactggaatgtggcaacattgagatt
gctctggaagcagccaaggctctggatgacaagaattgctgggagaaactgggagaagtg
gcactactgcagggaaatcaccagattgtggagatgtgctaccagcgcaccaagaacttt
gataggctctccttcctctatcttattactggcaacctggagaagcttcggaagatgatg
aagatagctgagatccgtaaagatatgagtggccactaccagaatgccttgtatctagga
gatgtggcagagagagtgaggattctgaagaactgtggacaaaagtccctggcctatctc
acagctgcaactcatggtctggatgaggaagctgaaaacctgaaggaaacgtttgatcct
gaaaaggaaacgattccagacattgatcccaatgcaaaactactacagcctcctgctcct
gtcatgcctctagataccaactggccattgctgactgtctctaaggggttctttgaagga
acaattgctagcaaaggcaaagggggtgccttggctgctgacatagatattgacaatgtt
ggtactgaaggctggggagaagatgcagaattacagctcgatgaagatggctttgtggat
gctggagaaagctttggagaggaaggtctgggtaaagggcaggaagaaggaggtggatgg
gaagttgaagaagacttggatcttcctcctgaactggatgttcctgctggtccagcagga
ggagcagaagatggcttctttgtgccacccaccaagggcaccagcccagcccaggtgtgg
tgtaacaattcacagcttcctgttgaccacattctggcaggttcctttgagacagcaatg
agactcctccatgaccaggtgggagtaacaaactttggaccctacaagcagctgttcctg
cagacctatgcccgtggccgtacaacctaccaagctctgccatgtctccctaccatgtat
ggctacccacatcgtaactggaaagaagctggcttgaagaatgccctcccagctgttggg
ctgaagctcaatgacctgattcaacgcttacagctgtgttaccagctcacaacagctggc
aagtttgaggaggctgtggagaagttccgctccatcttgctgagcgtgcccttgctggtg
gtggacaataagcaagagattgctgaggcccagcagctgatagccatttgtcgggagtat
atcgtagggctctcaatggagatcgagaggaagaagctgcccaaggagaccttggagcac
cagaagcgaatctgtgagatggctgcctatttcacccactccaacctgcagcctgtccac
atgatcttggtgctgcgcactgctctcaacctcttcttcaaactcaaaaacttcaagaca
gctgctacttttgctcgtcggctgctggagctgggtccaaagcctgaggtggcccagcag
acccgcaagatcttgtcagcatgtgagaagaatcccactgacacctaccagctcaactat
gacatgcacaacccctttgacatctgtgctgcctcttaccgacccatctatcgtggcaag
cctgtggagaagtgtccacttagtggagcttgctactgccctgagtttcaggggcagatc
tgccgtgtcacaacagtgacagagattggcaaagatgtcattgggctgcggatcagcccc
ctccagttccgctga
DBGET
integrated database retrieval system
