Tympanuchus pallidicinctus (lesser prairie-chicken): 128090702
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Entry
128090702 CDS
T08967
Name
(RefSeq) transcription factor SOX-17-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
128090702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpai03000
]
128090702
Transcription factors [BR:
tpai03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128090702
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
128090702
NCBI-ProteinID:
XP_052559149
LinkDB
All DBs
Position
Unknown
AA seq
403 aa
AA seq
DB search
MSSPDAGYASSEEQAQGRGALPAMMPALGPCPWAEALSPPGEAKAKGEAGTTGGRGKGEA
RIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLAEKRPFVEEAERLRV
QHMQDHPNYKYRPRRRKQVKRLKRAESGFPQHGAAEAAPPALGSDGGGIGTCAESLALPY
AERGYAAGPGRYRDCPPLGAAFDGFGLPTPDPSPLDAAHGEAPFFAPGPPDECAPGPYVG
YGPAAAVDFSAVGAGESPAGAALRRHHQHPHQHPHPAAGELGPGGPLQGLLGCPAPPHYY
GQLCPGRGPPAPVPVALGAQPSPPPETAACREPLEHLPQEELLGEVDRSEFEQYLRFACK
AELGPPFAGHDVAGLASPEAAGPLSAVVSDASSAVYYCGYADG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccccgatgcgggctacgccagcagcgaggagcaggcgcagggccggggcgcg
ctgcctgccatgatgccggccctgggcccgtgcccctgggcggaggcgctgagcccgccg
ggcgaggccaaggcgaagggcgaggcgggcacgacgggcgggcgcggcaagggcgaggcg
cggatccggcgccccatgaacgccttcatggtgtgggcgaaggacgagcgcaagcggctg
gcgcagcagaacccggacctgcacaacgccgagctcagcaagatgctgggtaaatcgtgg
aaggcgctgtcgctggcggagaagcggccgttcgtggaggaggcggagcgtctgcgggtg
cagcacatgcaggaccatcccaactacaagtaccggccgcggcggcggaagcaggtgaag
cgcctgaagcgtgcggagagcggcttcccgcagcacggcgcggccgaggcggcgccgccg
gcgttgggctccgacggaggcggcatcgggacgtgcgccgagagcctggcgctgccctac
gcggagcgcggctacgcggcggggccggggcgctaccgggactgcccgccgctgggcgcc
gccttcgacggcttcgggcttcccacgccggacccgtccccgctggacgcggcgcacggc
gaggcgccgttcttcgcgccggggccgcccgacgagtgcgcgccggggccctacgtcggc
tacggccccgcggcggcggtagacttctcggcggtgggagcgggcgagagccccgcgggg
gcggcgctgcggcggcaccaccagcacccgcaccagcacccgcaccccgctgccggcgag
ctggggccgggcggcccgctgcaggggctgctgggctgcccggcgccgccgcactactac
gggcagctgtgcccgggccgcggcccgcccgctcccgtgcccgtggcgctgggcgcgcag
ccgtccccgccgcccgaaaccgcggcgtgccgggagccgctggagcacttgccgcaggag
gagctgctgggcgaggtggaccgcagcgagttcgagcagtacctgcgcttcgcctgcaag
gccgagctggggccgccctttgcgggccacgacgtggccgggctggcgtcgcccgaggcc
gccgggccgctttccgccgtggtgtcggacgccagtagcgccgtctactactgcggctac
gccgacggctga
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