Tympanuchus pallidicinctus (lesser prairie-chicken): 128090816
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Entry
128090816 CDS
T08967
Symbol
LAMA1
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-1
KO
K05637
laminin, alpha 1/2
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128090816 (LAMA1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128090816 (LAMA1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128090816 (LAMA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
3keto-disac_hyd
Bap31_Bap29_C
Motif
Other DBs
NCBI-GeneID:
128090816
NCBI-ProteinID:
XP_052559445
LinkDB
All DBs
Position
Unknown
AA seq
3239 aa
AA seq
DB search
MCARSGTHRHGIRSHNSGGRTRKESLNFSSPWRCQSHRNAAQCLGLAVPPPRCTDFSLIA
SHPPCLPPHHAPAEHQLIHCDSPELFRALSDHSWESCGEGAPRWGSVGVHGCGSGAERPG
GAYKTGALGGAGSGESLPAAAAMVTGSGGRRLLLVLLAAVALLGAPGRGQPRGLFPAILN
LASNAHISTNATCGEKGPEMFCKLVEHVPGRPLRNAQCRVCDRHSANPKEQHPISSAIDG
TNNWWQSPSIQNGRQYHWVTITLDLRQVFQVAYVIIKSANAPRPGNWILERSIDGTEFKP
WQYYAISDTECLTRYNITPRVGPPTYKRDDEVICTSYYSRLVPLEHGEIHTSLINGRPSA
DDPSQKLLEFTSARYIRLRLQRIRTLNADLMTLSHHDPKELDPIVTRRYYYSIKDISVGG
MCICYGHARSCPLDEVTKKLQCQCEHNTCGESCNRCCPGYHQKPWRPGTISVGNKCEKCN
CHNKAEDCYYNQSIADQKRSMNIHGQYTGGGVCLNCSQHTTGINCEMCADGYFRPQKVSP
YDDHPCYPCGCDPFGSLSSVCVKDEHQSDSQHGTWPGQCQCRDGYTGEKCDRCAFGYRGY
PNCLRCNCSLIGSINEDPCTEPCLCKENVEGENCDLCKPGFYNLQERNPQGCTECFCFGV
SDVCDSLTWPISQISDMAGWLITDLYNAKGVQPQRGQFDGPRQISINNTDAVKILKHTYY
WSAPEPYLGNKLTAFGGDLKYTVSYDIPMDSVDSDIVSSVDVIIKGNGQILSTRAAGLSL
QPYEEYSNSVRLVSDNFIDFNTKKAIDRERLMTVLVNVTHLLIRANYNIAKKAVYRLDSV
TLDNASANVIDLSSSADVEFCECPQGYTGISCESCLPGYYRVDGILFGGICQPCKCNGHA
TECDTQGVCFACQHNTTGPFCDQCLPGFYGSPSQGTPEDCQPCACPLSSAANNFSPTCQL
SEGEGIVCDKCLPGYTGSRCERCANGYYGNPLVPGQSCAPCECNGNVNTQEDGYCDTVTG
QCLKCVGNTAGLHCEKCADGYYGDAVTEKSCRACECHVNGSLSSVCHHKTGICDCKSDVI
GQKCDKCLNGYYGLLTGLGCVPCNCSQFGSISEDCNHQGQCHCLPGVTGAKCDRCAHGFH
SLRNGGCTPCDCAHTQNNCNADSGKCICPPHTRGPKCELCEENHWGLSPKLGCKACNCSG
SGSNSLQCDVLTGQCQCKAEFGGQNCSRCALGYRDYPDCVACDCDLSGTKAEMCDVTEGL
CACEEETGICTCKENVFGLQCSECKPGTFALSANNTLGCIPCFCFGMSTSCLEVEDHVRI
PITLTPDQSVLHVVAQSNLTGTVEGVFSQFPDVLLDAAIVRKYLNTETFFWRLPEQFQGD
QLMAYGGKLRYSVAFYALDGFGTSNFEPQILMKGGRTSKLVIYVDSPSPENGIRSEKEVE
MKEDSWKYFNSVSDQPVSRSDFMSVLSNIEYILIKAAYGQGLQQSRIANISMEIAVKFEE
MHLGRSRAHLIEQCRCPAGYAGFSCQSCAPGYYREKPKEFTVRETHTIIAPCVPCQCNNH
SETCDPETGKCLNCRDNTVGDYCSTCAPGYYGKVIGSVNDCSLCACPRANPVSFSPTCVL
KGVQDYHCDACLPGYEGQYCEKCSLGYYGDPQLPGGSCHLCRCNPSGSVHLNCDHATGKC
LCKQGVTGQLCEECEPRHLLLEEECVSCDDNCTGVLLNNLDSLSKDILSLNITGIVLVPS
GILSELENATKHLKGFIAPREDPTYSLATAEEGLLSLSRNVDQLPQESSKILRKAWQLNA
MTQETRSKSKELSGFIDTVHTAIKVLAEVAMSLNETLGLDLPLSNVTSQSLQDDISTLLN
ELRKKDFVQRHYNATSVLKAAENLLLQVQKDYLKPQQELAELKKDASQLLSKHNSKLQDA
QDLVNDALADINETNRLFPLISSNLAELNEKKLSIKENKEVSTMLIKEGKFLVNVAAALS
QDVKNSTSNLEVHQDELLQWNNNLRHHVDELVMQMSVRGVLDLVYRAEDHAAQFQRLADA
LESGLSKVKDVTLNATAAVYTHSNVKNVIERTESLADDASRIVNGPLDLPDESLSLLGKD
TLQLSSKVQNEAKNLKKKSNGLLSELNGLSKKVEKIQESTVKIVNQLNDSLLALKALPNG
TRKYMLEVKELAVYANISTMVGLNHFGDFSQKLLNASSTLSQVNGTLRKTSELIIDSSKA
VITAEKQAKEVEAQARLLLDRLKPLKTLEENLSRNLSEIKELISQARKQAASIKVAVSAD
RDCVRAYQPQISSTNYNSLTLNVKTTEPDNLLFYLGSNGKTDFLAVEMRRGKVALLWDLG
SGSTRVEYPDFQIDNNKWHRIHATRFGKTGTLSIEEMNSNQKSSPKSATSPGTASILDAN
KSTLMFIGGLGGQIKKSPAVKVTHFKGCMGEASLNGKSIGLWNYVEREGKCSGCFGSPQD
EDTSFHFDGRGYSVVEKALRSTVTQIIIFFSTFSPNGLLLYLASNGTRDFLSLELVDGKV
RLAVDLGSGPLVLTTENRYNNGTWYKISFSRNKKQGMLAVTDAYNLNYKETKQGEAPGVA
SDLNRSDKDPIFIGGLPRSRAVRKGLNSRMYVGCIKNLEISRSTFDLLRNSYGVRKGCIL
EPIRSVNILNNGYIELEPKSLSPESELMATFATKNSNGIILAGLSRGLEKRRRRQAHLPF
FSIMLIDGHLAVHVNAGDRASTRKVILRSANGTYSDGQEHSVILIRNKRIITVQVDESNP
SELRLGSSAEMSPMNISNFYAGGIPAGEGFFGLKMAGSFYGCISNLIFNKELWDFTTSMK
YEHVDMGSCFLSEKPKAAMQLEDVEIQAELPAPTRPPTDTKKVACAKEELPGHVQGAHQF
GLAKGSHLMLLFNQTTVRKKLSVQLNLRTFASSGLIYYMAHQNQIDYAALQLLGGQLYFS
FDLGKGRAVASHPAIVNDGKWHTIRTEYVKRKGIIIVDGQELVSVSALGDGSTLDVEGKL
YVGGLPLDYVAKNLGNVTHSIPACIGSMTINSKQLDKESPVSIFAVNKCYATVQDGTFFD
GSGFAALVREGYKVRTDVNITLEFRTTAMHGVLLGISSAKVDAIGLEIVNGKVLFHVNNG
AGRITAMYEPGVANSLCDGKWHKLQANTSKYRISLIIDGNLVQTDNPHIQSTSADTNNPI
YVGGYPGDVKQNCLTSKTSFHGCLRNLMLTKGQQADLFDFSRAFDLRGVFPHSCPGAQK
NT seq
9720 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcgcggagtggaacacatcggcacggtataaggtctcacaactctgggggacgc
actcgcaaggaaagcctgaatttttcaagcccttggcgatgtcagtcacataggaacgct
gcgcaatgccttggcttagcagtgcctcccccgcgctgcacagacttttccctcattgct
tcgcaccctccctgtctccctccccaccacgctcccgcagagcaccagctcattcattgc
gactctccagaactttttcgggcgctcagcgaccacagctgggagagctgcggggagggg
gcacctcggtggggctccgtgggtgtgcatgggtgcgggagcggggcggagcggccgggg
ggagcctataagacgggcgcgctcggcggggcgggcagcggagagtctctcccggctgct
gcagcgatggtgacgggcagcggcggtcggcggctgctgctggttctgctggcggcggtt
gcactgctcggggcgccgggacgtggccagccccgaggtctgtttcctgccattttgaac
ctggccagcaatgctcacatctccaccaatgccacctgtggggagaagggaccagagatg
ttctgcaaattggttgagcacgtcccaggacggccactgcgcaatgctcagtgtcgagtt
tgtgaccgccacagtgccaatcccaaagaacaacacccaatctccagtgcaattgatggt
accaataactggtggcaaagtcccagcattcagaatgggaggcaataccactgggtcacc
atcaccttggatctaagacaggtctttcaagttgcatatgtcatcatcaaatctgctaat
gctccacgacctggaaactggattttggaacgctccatagatggcacagagttcaaacca
tggcagtactatgcaattagcgacacagagtgtttaactcgttataatattacaccaaga
gttgggccgccaacttacaagagagatgatgaagtgatctgcacctcttactattccaga
ctagttcctctggaacatggagagattcacacatctctgatcaacggcaggcctagtgct
gatgatccttcacaaaagcttttggaatttacttctgcgcgatacattcgcctacgactg
cagcgtattagaacccttaatgctgacctcatgactctcagccatcacgatccaaaagaa
ctcgatcccattgttaccagaaggtactactattcaataaaggacatctctgttggtggc
atgtgtatttgctatggacacgctcgaagctgccccctggatgaagtcacaaagaaattg
cagtgccagtgtgagcataacacatgtggtgagagctgtaacagatgctgtccgggttac
catcaaaaaccgtggagaccaggaaccatttctgttgggaacaaatgtgagaagtgcaac
tgtcataacaaagctgaggattgttattacaatcagagtattgcagatcaaaaaaggagc
atgaatattcatggccagtacacaggaggtggtgtctgtttaaactgttctcaacatact
actgggatcaactgtgaaatgtgtgctgatggatattttagaccacagaaagtttctccc
tatgatgatcatccatgctatccttgtggctgcgatccatttgggtctctgagttctgtc
tgtgttaaagatgagcaccagtctgattcacagcatgggacttggccagggcagtgtcaa
tgcagagatggttacacaggagaaaaatgtgaccgttgtgcatttgggtatcggggttat
ccaaactgcttgcgttgcaactgcagcctaattggtagcattaatgaagatccatgcaca
gaaccttgtctttgcaaagaaaatgtagaaggtgaaaactgtgacctctgtaaaccagga
ttctacaacctgcaagagagaaatcctcaaggctgcacagaatgcttctgttttggggtt
tctgatgtctgtgacagcttaacatggcccatcagtcagatttcagacatggctggatgg
cttattactgatctgtataatgcaaagggtgtgcaacctcagcgaggccaatttgatggt
ccccgtcaaataagcatcaacaacactgatgctgtgaaaattctgaaacatacttactac
tggtcagcacctgaaccatatctaggaaataagctcacagcttttggtggggatttgaag
tataccgtgtcttacgacattccgatggacagtgtggacagtgatatagtatctagcgtg
gatgtcatcattaagggcaacggtcagattttgagcacaagagcagcgggtttgtcatta
cagccctatgaggagtactctaattcagtgagattggtatcagacaattttatagatttc
aatacaaaaaaagccatagaccgagaaaggctgatgactgttctggtgaatgtgacccat
cttctgatcagggctaactacaacattgccaaaaaagctgtgtacaggctggactcagtg
accctggacaatgcaagtgcaaatgtaatagatctttcttcatcagcagatgtggaattc
tgtgaatgtcctcaaggttatactggaatatcatgtgagtcctgtctccctgggtactac
cgagtggatggaatactctttggtggtatttgtcaaccctgcaaatgcaatgggcatgca
actgaatgtgatactcaaggtgtttgctttgcttgtcagcacaacacgacaggacctttt
tgtgatcagtgcttgcctggcttttatggaagtccatcccaaggaactcctgaggactgc
cagccctgtgcctgtcctctgagctctgctgcaaacaatttcagtcctacttgccagctg
agtgaaggagagggaattgtctgtgataaatgtcttccaggctatactggctctcggtgt
gaaaggtgtgcaaatggttactatggaaatccactggtgcctggacagtcgtgtgctcct
tgtgaatgcaatggcaatgtaaacactcaagaagatggttattgtgatactgtcacaggt
caatgcttgaaatgtgtggggaacacagcaggtcttcactgtgaaaagtgtgctgatggg
tactatggggatgcagtgactgagaaaagttgccgtgcctgtgagtgccatgtgaatggc
tccctttccagcgtctgtcatcacaagacaggcatctgtgactgcaagtcagacgtgatt
ggacaaaaatgtgacaagtgcttgaatggctattatggcttgcttactggacttggctgt
gttccctgcaactgcagtcaatttggctccatctctgaagactgcaatcatcaggggcag
tgccactgcttaccaggagtgactggagcaaagtgtgatcgctgtgctcatggctttcac
tcgttgcggaatggtggctgtacaccctgtgactgtgctcatactcagaacaactgtaat
gcagattctggtaaatgcatttgtccccctcatactcggggaccaaaatgtgaactgtgt
gaagaaaatcactggggactctctcctaaacttggctgcaaggcctgcaactgtagtggt
tctggttcaaatagtcttcagtgtgatgttttgacgggtcagtgccagtgtaaagctgaa
tttggaggacaaaactgttccagatgtgcattaggctacagggactacccggactgtgtt
gcttgtgactgtgacttaagtggaaccaaagcagagatgtgtgatgtcactgaaggactt
tgtgcttgtgaagaagaaactggtatctgtacctgcaaggaaaatgtgtttgggctacag
tgcagtgagtgtaaacctggaacttttgctctgtctgctaacaacacgctaggttgtatt
ccatgtttctgttttgggatgtccacatcttgtttggaagtagaagatcatgtgagaatt
cccataaccttaactccagaccagtctgttctgcatgtagtagctcaaagtaacctgact
ggaacagtggaaggagtattttcacaatttcctgatgttttactggatgctgccattgtc
agaaagtacttaaatacagaaacatttttctggaggttaccagagcagtttcaaggagac
cagctcatggcatacggaggcaaactgagatatagtgttgctttttatgctttggatggc
tttggaacctcaaattttgagccacagattctaatgaaaggtggtcgtaccagcaaattg
gtcatctatgtagacagcccttctccagaaaatggaataagaagtgagaaagaagtggaa
atgaaggaggattcttggaagtattttaattctgtgtctgaccagcctgtctcacgttct
gacttcatgtctgtgctaagcaatattgaatacatccttatcaaggcagcctatggccaa
ggattacagcaaagcagaattgcaaatatctcaatggaaattgcagtgaagtttgaagag
atgcatctaggcagatctagagctcatcttatagagcaatgtagatgtcctgctggctat
gctggattctcatgccagagctgtgctccaggatactacagggagaaacctaaggaattc
actgtaagagagactcatactattatagcaccttgtgtgccatgtcagtgtaataatcac
agcgaaacctgtgatcctgaaaccggaaagtgtttgaactgcagagataacacagttggt
gattactgcagtacttgtgctccaggctactacggaaaagtaattggatctgtcaatgac
tgctctctttgtgcttgtcccagagccaaccctgttagttttagtcccacttgtgtcctg
aaaggcgtccaggattaccactgtgatgcttgtctcccaggttatgaaggacagtactgc
gaaaagtgctcccttggatactatggtgaccctcagcttcctggaggcagctgccacctg
tgtcgatgcaatccaagcggctctgttcatcttaattgtgatcatgcgactggcaagtgc
ctctgtaagcagggagtgacaggacagctctgtgaggagtgtgaaccaagacatcttctt
ctggaagaagagtgtgtttcttgtgatgacaactgcacaggagttttgctaaacaacttg
gacagtctcagtaaagacatactttcactgaacattactggtattgtcctcgtgccctct
gggatactatcagagctggagaatgcaacaaaacatttaaagggctttatagctcctaga
gaggatccaacatactcgttagctacggcagaagaaggtcttctgagtttgtcaagaaat
gttgatcagttgcctcaagagtcatctaaaattttgagaaaagcttggcaacttaacgca
atgactcaggaaaccaggagtaaaagtaaagaactgagtggatttattgacacagtacat
acagccatcaaagtacttgctgaagttgcaatgtcgctaaatgaaacactgggcctggac
ctcccactatcaaatgttacatctcagagcctacaggatgatatttcaaccctactgaat
gaactgcgcaagaaagattttgttcaaaggcactataatgctaccagtgttctaaaagct
gcagaaaatttgttgctccaggttcagaaagactatcttaaaccccagcaggagcttgct
gagctgaagaaagatgcaagccagctcttatcaaagcacaacagcaaactgcaagatgcc
caggatctggtgaatgatgcacttgctgacatcaatgagacaaatcgcttgtttcctctt
atttctagtaacctggcagagttaaatgaaaagaagctgagtataaaggaaaataaagaa
gtctcaaccatgcttattaaagaaggaaaattcctagtaaatgttgctgctgctctttcc
caagatgtaaagaactctacatcaaacttggaggtccatcaggatgagctactccagtgg
aataacaacttgagacaccatgtggatgagctggtgatgcagatgtctgtgagaggagtg
cttgacctggtatacagagctgaggatcatgccgctcagttccaaagacttgcagatgca
ctggagagtggcctctcaaaagtaaaagatgtgactttgaatgcaacagctgcagtctat
acccactccaatgtcaaaaatgtgattgaaaggacagagagtttggcagatgatgcatct
aggattgtgaatggccctttggatttaccagatgaatctctcagtcttcttggtaaagac
actctgcagcttagctccaaagttcagaatgaagctaaaaatctgaagaaaaaaagtaac
ggccttttatctgaattgaatggattgagcaaaaaagtagaaaagattcaggaaagtact
gttaaaattgtcaaccagcttaatgattccctgttggcactgaaagcgttgcccaatggt
acaaggaaatacatgctggaagtgaaagagctggctgtatatgcaaacatcagcactatg
gtgggtttaaaccactttggggatttcagtcaaaagctgctgaatgcttcatctacattg
tcccaagttaatggcacattgaggaaaaccagtgagcttataattgattcatcaaaagct
gtaatcacagctgaaaaacaagctaaagaagttgaagcacaagcgagacttttacttgat
aggctgaaacctctgaaaacgctagaagagaatctgagcagaaatttgtctgaaattaaa
gaactcatcagtcaagcccggaaacaagcagcatctattaaagttgcagtatcagcagac
agagattgtgttcgtgcctaccagccccagatttcatctacgaattacaactctttaacc
cttaatgtgaaaactactgaaccagataacctccttttctacctgggtagcaatggaaag
acagacttccttgctgtggagatgcgacgtggtaaggtagctcttctttgggatttgggc
tcaggatcaacaagagtagaataccctgattttcaaattgacaacaacaaatggcacaga
atacatgcaaccaggtttggaaaaacaggtacactcagcatagaggaaatgaactccaat
cagaagtcttcacctaaatctgcaacctcaccgggaacagctagcatactagatgctaac
aaatcaacactaatgtttattggaggacttggagggcaaattaagaagtctcctgctgtt
aaagtaacacattttaaaggatgcatgggagaagcatccctgaatggaaaatctattggt
ctttggaactacgtagaaagagagggcaagtgcagtggatgttttggaagcccacaggat
gaagacacttcatttcattttgatggcagaggatactcagttgttgagaaggcacttcgg
tcaacagtgactcagataataatattcttcagcaccttttcacctaatggactacttctg
tatcttgcttcaaatggcactagagatttcttgtcccttgagcttgttgatggcaaagtg
agactggctgttgatctaggttcgggacctcttgttctgacaacagaaaatcgttacaac
aatggaacatggtacaaaatttcattcagtcggaacaagaagcaaggaatgctggcagtc
acggatgcgtataaccttaattacaaagaaaccaagcaaggagaagcacctggggttgcc
tcagacttgaatcgctctgataaggacccaatcttcattggtgggctcccgagatcaagg
gctgtaaggaaaggtcttaatagtaggatgtatgtgggatgcatcaagaatctggaaata
tcccgttcaacctttgacttgcttagaaattcatacggagtaagaaaaggctgtatactg
gagcctattcgtagcgtgaatatcttgaacaatggatatattgagttggaacctaagtcc
ttaagtccagaatcggaactgatggcaacttttgctacaaagaacagcaatggtattatc
cttgctggactcagtaggggactggagaagcgacggcgcagacaagcacatttgcccttc
ttttccattatgctgattgatggtcatcttgcagtgcatgttaatgctggagatagagca
agtactcgaaaagtaattcttaggtctgctaatggaacatacagtgatggacaagaacac
tctgtcatcctaattcggaataagagaatcataactgtacaggtggatgaaagtaacccc
tcagaactgaggcttggttcatcagcagaaatgagccccatgaacatttccaacttctat
gctggtggcatccctgcaggagagggcttctttgggctaaaaatggctggctccttttat
ggctgtatcagcaatcttatttttaacaaggaactttgggatttcaccacttccatgaag
tatgaacatgtggatatgggcagctgctttttgtcagagaagcctaaagcagccatgcag
ctagaagacgtggagattcaggctgaactaccagctcctacgaggcctcctacagataca
aaaaaagtagcttgtgcaaaagaggagctgcctggtcatgttcaaggtgcccatcagttt
ggacttgccaaaggcagccacttgatgctgctcttcaatcagactactgtcagaaaaaag
ctttctgtccagctgaatctcagaacctttgcctccagtggcctgatttactacatggct
caccagaaccaaattgattatgcagccttacagcttcttgggggacagctctatttttca
tttgatttaggcaaaggaagagcagtagcttctcaccctgctattgtcaatgatggaaaa
tggcatacgataaggacagaatatgttaaaagaaaaggtatcatcattgtggatggacag
gaattggtatcagtcagtgccctgggagatggcagcactttggatgtggagggcaagctg
tatgtgggaggactccccttagactatgtggcgaagaatcttggaaatgtgactcacagc
attcctgcctgcattggcagtatgacgattaacagcaagcaactggataaggagagccct
gtctccatctttgctgtgaataaatgctatgcaacagtgcaggatggcacattctttgat
ggaagtggttttgctgctcttgtcagagaaggttacaaagtccggactgatgtgaacatc
acgcttgagtttcgtactacagccatgcatggggttctccttggaatcagcagcgctaaa
gttgatgccattggattggagattgtaaatggcaaggttttattccacgtcaacaatgga
gctggcagaataacagctatgtatgaaccaggagttgcaaacagtttatgtgatggaaaa
tggcacaagcttcaagcaaacacaagcaaatatcgtatctcactgataattgatgggaat
ttggttcaaactgataatccccatattcagtcaacatctgcagatacaaacaatcctatt
tatgttggaggttatcctggtgatgtgaaacagaactgtctcacaagcaagacctcattc
catggctgtctgaggaacctcatgctaaccaagggccaacaggctgacttgtttgacttc
agcagagcttttgacctgcgtggagtctttcctcattcctgccccggggctcagaaatga
DBGET
integrated database retrieval system
