Tympanuchus pallidicinctus (lesser prairie-chicken): 128091755
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Entry
128091755 CDS
T08967
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128091755 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpai03041
]
128091755 (DHX8)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128091755 (DHX8)
Spliceosome [BR:
tpai03041
]
Complex C
Other components
Step II factors
128091755 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
GIPC1_GH2
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
PRP38_assoc
T2SSE
nSTAND_NTPase5
PhoH
AAA_16
TsaE
Sigma54_activ_2
OB_RRP5_4th
Transformer
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128091755
NCBI-ProteinID:
XP_052560978
LinkDB
All DBs
Position
Unknown
AA seq
1196 aa
AA seq
DB search
MRGEAMADLAALEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVINLAEKNTTFDTFK
AVLQKNGAEFTDSLISNLLRLIQTMRPPSKPSTSKAEAVVKPKSEKERLKELFPALCRPD
NPNVRNMLDEDDVKVAADALKELEALMPSADRQGKQRNSEHRAKKKRRSRSRSRDRKRRH
RSRSRSRSRTWDRNRGKSRYHSRSRSPSRDRRDRDKYVEKSSERWRDKHVDRPPPEEPSI
GDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVL
SFTGSKTSLSMKDVDQDTGEDLNPNRRRNLVGETNEETSMRNPDRPSHLSLVNAPEVEDD
TLERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEE
EPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMG
LNTHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRES
LPIFRLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAM
SVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIML
DEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPV
EILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDV
PELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKV
YNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTN
LASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFP
LEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLT
LLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQ
KAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMRE
VTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgcggggggaagctatggcggacctggcggctttagaggagctcgccaagctcgaatat
ttgtcgctggtttccaaggtctgcaccgagctcgacaaccacctgggcatcaacgacaag
gacctggccgaattcgtgatcaatcttgccgagaaaaacaccacgtttgacacgtttaaa
gctgttctccaaaagaatggggctgagttcactgattccctcattagtaacttgctgcgt
ctcatacagacaatgcggcctccatcaaaaccatctacgagtaaagcagaggctgttgtc
aaacccaagtcggaaaaggaaaggttgaaggaattatttccagccctttgcaggccagac
aatcccaacgttaggaacatgctggatgaagatgatgtgaaagtggcagcggatgcactt
aaagaacttgaagctctgatgcctagtgcagacaggcaaggcaaacagaggaacagtgag
caccgggcaaagaaaaagaggaggagccgaagccggagcagggacaggaaacgaaggcac
agatctcgttctaggtctcgttccaggacttgggataggaacaggggtaaatccagatac
cactcaaggagcaggagtccaagtagggaccgtagggatcgagacaagtatgtcgagaag
agcagtgagagatggagagacaagcatgtggaccgtccaccgcctgaggagccttccatt
ggagacatttacaatggcaaagtcaccagtataatgcagtttgggtgctttgtgcagctg
gaaggtctgaggaagcgttgggagggcttggtccacatctcagagcttcgaagggaagga
cgtgttgccaacgttgctgatgttgtgagcaaaggtcaaagagtgaaggtcaaagtgtta
tcctttactggatccaaaaccagcctgagcatgaaggatgttgatcaagacactggggaa
gacttgaatccaaaccggaggagaaacttggttggagaaaccaatgaagaaacttcaatg
agaaacccagacagacccagtcacctgtccctggtgaatgccccagaggtggaggatgat
accttggagcggaaacggctcacccgcatttcagacccagagaaatgggaaataaagcag
atgattgctgccaatgtgctttctaaggaggagtttcctgactttgatgaggagactggg
attcttcctaaagttgatgatgaagaagatgaagatctcgagattgagttagttgaagag
gaaccaccattccttcgaggtcatactaaacagagcatggatatgagtcctataaaaata
gtaaagaatccagatggctcgttgtcccaggctgcaatgatgcagagtgctttagctaaa
gaaagaagggaacttaaacaagcccaaagagaagcagagatggattctatccccatggga
ctcaacacacattgggtggatcctctccctgatgtggatggaagacaaatagctgcaaat
atgcgaggtattgggatgatgcccaatgatatcccagagtggaagaaacatgcatttggt
ggcaacaaagcctcttatggtaagaagacacagctttctatcattgagcagagagagagt
ctcccaatcttcagactgaaggagcagctaatacaagctgtgcacgacaaccagattctg
attgttattggagagacaggatctgggaaaacgacacagattactcagtacctggctgag
gcagggtacacatcaagagggaagattggatgcactcagcctcgcagagtggctgcaatg
tctgttgcaaagagagtgtcagaagaattcggttgctgtttgggacaagaggttggctac
accattcgatttgaagactgcactagccctgaaactgtcatcaagtacatgacagatggg
atgttgctgagagagtgcttgatagaccctgatctgacccagtatgccattattatgctg
gatgaagcccacgagaggacaattcacacagatgtgctctttggactcctgaagaagaca
gtgcagaaaaggcaggatatgaagctgatagtgacgtcggcaacactggatgctgtcaag
ttctctcagtatttctatgaggctccaatcttcacaattcctggcagaacgtacccagtc
gaaattctatacacaaaagagccagagacagattatttggatgctagtctgattacagta
atgcagatccacttaactgaacctccaggtgatattttggtgtttctaactggccaggag
gagattgacacagcctgtgagatcctttatgaaaggatgaaatctctgggacctgatgtt
ccagagctgattatcctcccagtatattcagccttacccagtgaaatgcaaaccaggatc
tttgacccagctccaccaggaagcagaaaggttgttattgccactaacattgctgagacg
tcgctcaccattgatggaatatattacgtagtcgatcctggctttgtgaagcagaaggtt
tacaactccaagactgggattgaccagctggttgttacaccaatctcacaggctcaagca
aagcagcgagcaggaagagctgggagaacaggacctgggaaatgctataggctgtacaca
gagcgtgcttatcgagatgaaatgctaacaaccaacgtgcctgaaatccagagaacaaat
ttagccagtacagtgctctccctgaaggcaatgggcatcaatgatctgctgtcctttgac
tttatggatgctcccccaatggaaactctcatcactgccatggagcagctttacactctg
ggagctctggatgatgagggattactgactcgacttgggcgcaggatggcagaattcccc
ttggaacccatgttgtgtaaaatgttgatcatgtctgtacatctgggatgcagcgaggaa
atgctgacaatagtctccatgctgtctgttcagaatgtgttctacaggccgaaggataaa
caagcacttgctgatcagaagaaagccaagttccatcagacagaaggtgaccacctcacc
ctgctggctgtgtacaattcctggaagaacaacaagttttccaatccttggtgctatgaa
aactttatccaagcccgctccttacgcagggcgcaggacatccgcaagcagatgttgggc
attatggacaggcacaaactggatgtggtgtcctgtggcaaggcaacagttcgagtccag
aaggccatttgcagtggtttcttccgaaatgcagcaaagaaggatcctcaggagggttat
cgaacgctcatcgatcaacaggttgtctatattcacccatccagtgctctcttcaacagg
cagccagaatgggtggtgtatcacgaactggtgctgaccaccaaggaatacatgcgtgaa
gtgacaaccattgatccccgctggctggtggaatttgcaccagcattcttcaaggtttcg
gatccaaccaaactgagcaaacagaagaagcagcagaggctggaacctctgtacaaccgc
tacgaggagcccaacgcctggagaatatcgcgcgcgttccgacgccgataa
DBGET
integrated database retrieval system
