Tympanuchus pallidicinctus (lesser prairie-chicken): 128091856
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Entry
128091856 CDS
T08967
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
128091856 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tpai04040
]
128091856 (SCN8A)
Ion channels [BR:
tpai04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128091856 (SCN8A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
FraC
Motif
Other DBs
NCBI-GeneID:
128091856
NCBI-ProteinID:
XP_052561206
LinkDB
All DBs
Position
Unknown
AA seq
1978 aa
AA seq
DB search
MAARLLAPPGPDSFKPFTPESLANIEKRIAEEKKKKRPKQDSSHRDDDEDSKPKPNSDLE
AGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTLFRFSATPALYILSPFNL
FRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETFLDNGSRGF
DWEEYTNNMSNFYIIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGRMSRSSSEISK
LSSKSAKERRNRRKKRKDKELSEGEEKGDNEKVFKSESEDGMRRKAFRLPDNRIGRKFSI
MNQSLLSIPGSPFLSRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLFIP
IRGRDRRSSYSGYSGYSQGSRSSRIFPNLRRNIKRNSTVDCNGVVSLIGGPPSSMPGGRL
LPEGTTEIEIKKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELEESQRKCPPC
WYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPEFE
HVLSVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLANVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYK
ECVCKINPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMV
IGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWIKAKVREFMQAH
FKQREADEVKPLDELYDKKVNCIANHTGADIHRDIDYQKNGNGTTSGIGSSVEKYIIDED
HMSFINNPNLTVRVPIAVGESDFENLNTEDFSSDTDPDGSKEKLDDTSSSEGSTIDIKPE
VEEVPVEAPEEYLDPDACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFLIVEHNWFET
FIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCAYGFVKFFTN
AWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVG
AIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEERFEIDIVNNKTDCEALMPP
NSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPKYEDNIYMYI
YFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQK
PIPRPLNRIQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDILYWINLVFV
IFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRLA
RIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGI
DDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFKGDCGNPSVG
IFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQF
IEYSKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGEL
DILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRSRLARRGFISRRPLP
TKMENGGTNREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGRRERAKRQKDVRESKC
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacggctgctcgcaccaccaggccctgatagttttaaacctttcactccggag
tctctggctaacattgagaaacgcattgcagaagaaaaaaagaagaagcgtccaaagcaa
gacagcagccatcgcgacgacgatgaagacagcaaaccaaaaccaaacagtgaccttgag
gcggggaagaatttgcctttcatctatggggacatccctaaaggcctggttgctgtacca
ctggaggactttgacccttattatatgacccagaaaacctttgtagtactaaacagaggg
aaaacactcttccgatttagtgccacacctgccttgtacattttaagtccttttaatctg
tttagaagaatagctattaaaattttgatacattcagtatttagcatgatcattatgtgc
actattttgaccaactgtgtattcatgacttttagtaacccacccgaatggtcgaagaat
gtggagtatacattcactggcatttatacatttgaatcacttgtgaaaattattgcaaga
ggtttctgtatagatggctttactttcctacgagacccatggaactggctagatttcagt
gtgatcatgatggcgtatataacagagtttgtaaacctaggcaatgtttcagctctgcgc
actttcagggttctgagagctttgaaaactatttctgtaattccaggcctgaagaccatc
gtgggtgccctgatccagtcagtgaagaagctgtcggatgtgatgatcctgacggtgttt
tgtctcagtgtctttgctctgattgggctgcagctgtttatgggcaatttgaggaacaag
tgtgtgatttggccaattaacgtgaacgagacgttcctggataacggctcccggggcttt
gactgggaggaatacaccaacaatatgtcaaatttttacataattcctggtgcccctgat
cctttgctctgtggtaacagctccgatgcaggtcaatgtccagagggttacacgtgcatg
aaagcaggacggaacccaaactacggttacacgagctttgacactttcagctgggctttc
ctggctctgtttcgccttatgactcaggacttttgggaaaacttgtatcaattaacctta
cgagcggcaggaaaaacctacatgatcttctttgtcctggtgatcttcgtgggctcgttc
tacctggtcaacctgatcctggctgtggtggccatggcttatgaagagcagaaccaggcc
acgttggaggaggcagagcagaaagaggccgaattcaaggccatgttagaacaactgaaa
aagcagcaggaggaggcacaggctgctgccatggtcacttcggcagggacagtctctgag
gatgctgtggaagatgatggtggagggaggatgtctcggagctcatcagagatctctaaa
ctgagttccaagagtgccaaggagcgccgtaaccggaggaagaagcggaaggacaaagag
ctgtcggaaggagaggagaagggcgacaacgagaaagtgttcaagtcagaatcagaggat
ggcatgaggagaaaagccttcaggctgccggataacaggataggaagaaagttttccatc
atgaaccagtctctcctcagcatcccgggctcccctttcctctcccgacacaacagcaag
agcagcatcttcagctacaagggccgattccgcgacccgggctcggagaacgaattcgcc
gacgacgaacacagcacggtggaagaaagcgaaggccgcagggattccctcttcatcccc
atccgcggccgcgaccgacggagcagctacagcggctacagcggctacagccagggcagc
cgctcctcgcggatattccccaacctccgccgcaacatcaagaggaacagcacggtggat
tgcaacggcgtcgtgtccctcatcggcggcccgccttccagcatgcccggcgggcgcctt
ctgcctgagggtacgactgaaattgaaattaagaagaaacctggtgggtctctcttggtt
tcgatggatcaggtgaacgcctcctatggaaggaaggatcgtaccaacagcgtgatgact
ggcttgaccaacacccttgttgaagagctggaggagtcccagaggaagtgtcccccatgc
tggtacaaatttgccaacacattcttgatctgggaatgccacccctactggatcaagctg
aaggagatagtgaacttaatcgtcatggatccctttgttgacctggccatcaccatctgc
attgtgctcaacactctgttcatggccatggagcatcatcctatgaccccagagtttgaa
cacgtgctgtctgtaggaaatctggttttcacgggaattttcacggcagaaatgttcctg
aagctcatcgccatggatccctactattatttccaggaaggctggaacatctttgatgga
ttcatcgtctctctcagtttaatggagctgagtctggcgaatgtggaagggctttctgtg
ctgcgatctttccgattgctgagagtcttcaaactggccaagtcctggcccactctgaac
atgctgataaaaatcatcggtaactcagtgggtgctttgggcaacttgaccttggtgttg
gccatcatcgtcttcatctttgcggtggtgggcatgcagctctttggcaaaagctacaag
gagtgtgtctgcaagatcaatccggagtgtgagctgccccgctggcacatgcacgatttc
ttccactccttccttattgtcttccgtgtgttgtgtggggaatggattgagaccatgtgg
gattgtatggaggtggcaggacaggccatgtgcttgattgtcttcatgatggtcatggtc
atcggaaacttagtggtgctgaacctgttcctggctttgctgctgagctccttcagcgca
gacaacctggcagcaacggatgacgatggggagatgaacaacctgcagatctccgtgatt
cgcatcaagaagggcatcgcctggatcaaggcgaaagtgcgtgaattcatgcaggctcac
ttcaagcagagagaggcagatgaggtcaagcctttggacgagctgtatgacaagaaggtg
aactgcattgccaaccacacaggggccgatatccacagagacatcgattatcagaagaat
ggcaacggcacgacgagcggaattgggagcagcgtggagaaatacatcatcgatgaagac
cacatgtccttcatcaacaaccccaacctcaccgtccgggtgcctattgctgtcggggaa
tcggattttgaaaatctcaacacagaagatttcagcagcgatacggatcctgatggcagc
aaagagaaactggatgataccagctcctccgaaggcagcaccattgatataaagcctgaa
gtggaagaagtccccgtggaggcaccagaagagtatctggacccggatgcgtgcttcacc
gagggttgcatgcagcgctgtaagtgttgccaggtcaatattgaggaggggctggggaag
tcttggtggacattgaggaagacgtgttttctgatcgtggagcataactggtttgagacc
ttcatcatcttcatgatcctgctgagcagtggagccctggcttttgaggatatttacata
gaacagaggaaaaccatccggaccatcttggagtacgcagacaaggtcttcacgtacatc
ttcatcctggagatgttgctgaaatggtgtgcctacggattcgtcaagttcttcaccaac
gcctggtgctggctggatttcctcattgtggctgtctctttagtcagccttatagctaat
gccctgggctactcggaactaggtgccataaagtcccttaggaccctaagagctttgagg
cctttaagagcgttgtcccgatttgaggggatgagggtggttgtcaacgccttggttggc
gctatcccttccattatgaatgtcttgttggtctgccttatcttctggctgattttcagc
attatgggggttaacctgtttgctgggaaataccattactgctttaacgaaacgtctgag
gagcgctttgaaatagacattgttaacaacaagacagactgcgaggcgctgatgccaccc
aactccactgagatccgatggaagaacgtgaaaatcaactttgacaacgttggggcagga
tacctggctcttctgcaagttgcaacattcaagggctggatggacatcatgtatgcagca
gtagattccagaaagcaagaagagcaacccaagtacgaggacaacatctacatgtacata
tattttgttatcttcatcatcttcggctcctttttcactctgaacttgttcatcggtgtc
atcattgacaacttcaatcaacaaaagaaaaagtttggaggtcaagatattttcatgaca
gaagaacaaaagaaatactacaatgccatgaaaaaactgggctccaagaagcctcaaaag
ccgattccccgacctctgaaccgcattcagggagccgtctttgacttcgtcacccagcaa
gccttcgacatcgtcatcatgatgctcatctgcctcaacatggtgaccatgatggtggag
acggacacgcagagcaagcagatggaggacatcctctactggatcaacctggtgtttgtc
atcttcttcacctgcgagtgtgtgctgaagatgttcgccttgcggcactactacttcacc
attgggtggaacatctttgacttcgtggttgtgattctgtccatcgtgggaatgttcctg
gccgaaatcatcgagaagtattttgtatcccccactctcttccgagtcatccgcctggct
cgtatcggacgtatcctgcgtttgatcaaaggagccaaagggatccgcaccttgcttttt
gccttaatgatgtctttgcctgccttgttcaacatcggcctcttgctcttcctggtcatg
ttcatcttctccatctttggcatgtccaactttgcctacgtcaagcacgaggctggcatc
gacgacatgttcaacttcgagacctttggcaacagcatgatctgcttgttccagatcacg
acgtcggctggctgggatggcctcctgctgcccatcctaaaccggcctccggactgcgac
ctggacaaggaacatcccgggagcggctttaagggggactgcgggaacccctcggtgggg
atatttttctttgtgagctacatcatcatctccttcctgatcgtggtcaacatgtacatt
gccatcatcctggagaacttcagtgtggcgacggaggagagcgcggacccgctgagcgag
gacgacttcgagaccttctacgagatctgggagaagttcgaccccgacgccacgcagttc
atagagtacagcaagctggcggactttgccgacgctttggagcatcctctgcgcgtcccg
aagcccaacaccatcgaactcatcgccatggacctccctatggtaagtggagataggatc
cactgtttagacatcctgtttgccttcaccaaacgcgtcctgggggacagcggagagctg
gatatactgagacaacagatggaggagaggtttgtggcttccaatccttccaaagtgtct
tacgagcccatcaccaccacgctgcggcgcaagcaggaggaggtctcggccgtggtgttg
cagagggcttacaggtcgcggttggcgaggcgggggttcatcagccgaagacccctcccc
accaaaatggagaacggaggaacgaacagagagaagaaggaagggacgccctccaccgcc
tcgctgccgtcctacgacagcgtcaccaaacccgagaaggagaagcagcagcgggcggag
gagggaagacgggaacgggcgaaaaggcaaaaagacgtcagggaatccaagtgttga
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integrated database retrieval system
