Tympanuchus pallidicinctus (lesser prairie-chicken): 128092087
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Entry
128092087 CDS
T08967
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128092087 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tpai01009
]
128092087 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tpai04515
]
128092087 (PCDH9)
Protein phosphatases and associated proteins [BR:
tpai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128092087 (PCDH9)
Cell adhesion molecules [BR:
tpai04515
]
Cadherins
Protocadherins
128092087 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
MAP17
Big_9
EphA2_TM
V_ATPase_I
RCR
7tm_3
DUF6249
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
128092087
NCBI-ProteinID:
XP_052561525
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MDLREFYLLTALIACLRLDSAVAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSTTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RFFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPFSGVIKSNVSFDREQQSSYTFDVKAVDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NSKGLFRIDPVTGNITLEEKPTPNDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQSKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGTAPPTTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQPQDEFYDQ
ASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPSLGPYQQPKS
PMSTFASQKEWVKKDKLVNGHTLTRTWKEDSNRNQFSDRKQYGSSEGHFNTGNHMTDIPL
ANLKSYKQASGAAESPKEHQL
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggaattttacttgttgaccgctttgattgcctgtttaaggctggattct
gctgtagctcaagaacttatttacactattagagaggagctgcctgaaaatgtccccata
ggaaacataccaaaggatctgaacatttctcacatcaatgctgccacggggaccagtgcc
agccttgtctacagactggtgtctaaagcaggggatgcccctctggtcaaagtgtccagt
accaccggggagatctttacaacatcaaacagaatagacagagaaaaactctgcgctggc
gcttcctatgcagaagaaaatgagtgtttctttgaacttgaagtggtgattctccccaat
gacttttttaggctgatcaagataaaaataattgtgaaggatactaatgacaatgcacct
atgtttccatcccctgtcatcaatatctccataccagaaaacactctgatcaacagtcgc
tttccaatcccatcagcaacagaccctgatacaggtttcaacggtgtgcagcactacgag
ttgttgaacgggcagagtgtctttggcctggatatcgtagaaactccagaaggagagaaa
tggcctcaactgattgtgcagcagaacttggatagagagcaaaaggacacctacgtgatg
aaaatcaaagtggaggatggaggtaccccacagaaatccagcacagctatcctgcaagtc
acagtaagtgatgtcaatgataacaggccagtttttaaagagagtcaagtagaggttcat
ataccagagaatgcgcctgtaggcacttctgtaattcagcttcatgctacagatgcagat
ataggaagcaatgcagaaatcagatatatttttggtgcccaagttgcgcctgcgaccaaa
agattttttgctttaaacaacaccacagggctgatcacagttcagaggtccttagatcgg
gaagagactgctattcacaaagtgacagtgctggctagtgatggcagctctacaccagct
cgggcaactgtgaccatcaatgtcactgatgtaaatgataaccctccgaacatagacctc
aggtacataataagtcccatcaatggcacagtgtacttatctgagaaagatcctgtcaat
acaaagattgccctaattacagtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaggtccccttccacctgaaggcagtttacgacaaccagtatttg
ttagagacctcttccttgttggactacgagggcaccaaagaattcagctttaaaattgtt
gcttctgattctggcaagcccagtttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctccgattttcagccagcctgtaattgagctgtcagtttctgaa
aacaaccgtcgcggtctatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggccctaatgcctccttttttgatctggatcgaaag
acgggagttttgacagcctccagagtttttgacagagaagaacaggagcgtttcattttc
actgttacagcccgagacaatggcacccctcctttgcagagtcaagcagctgtaattgtt
actgtgttggatgaaaatgacaacagtcccaaatttactcataatcatttccagtttttt
gtatcagagaacctaccaaagtatagcactgtgggggtgatcacggtgactgatgcagat
gctggggaaaacaaagcggtgaccctttctattctcaatgacaatgacaactttgtgctg
gatcccttctctggagttataaagtccaatgtttcttttgatcgagaacagcagagctcc
tatacctttgatgtcaaggcagttgatggagggcaacctcctcgctcttctacagcaaaa
gtgaccataaatgtcatggatgttaatgataacagtcctgttgtcatctacccgccttct
aatacttcttttaagctggtgccactctcagcaattccaggatcagtggtagcagaagtg
tttgcagtggatatcgacaccggaatgaacgctgaactgaagtacacaatagtgagtgga
aatagcaaaggtctgtttcggattgatccagtgacaggtaacatcactctggaggaaaag
ccaactcctaatgatgtggggctgcatcgcttagttgtcaacataagtgatttgggttat
cccaaatctttgcatactcttgtgcttgtttttttgtatgtaaatgatactgctggaaat
gcctcttatatttatgacttgatacgcaggactatggaaacgcctctggacaggaacata
ggagacagtagccaaccctaccaaaacgaggactatctcacaatcatgattgctattgtg
gcaggtgccatggttgtcatagtggtgatatttgtcactgttcttgttcgctgccggcat
gcatccagattcaaagccgcccagaggagcaaacaaggtgctgaatggatgtctcccaat
caggagaacaagcaaagcaagaaaaagaaaaggaagaaaaggaaatctccgaagagttct
cttttgaactttgtgaccattgaggagtccaaacctgatgatgcagttcatgaacccatc
aacgggacaataagccttccagcggagctggaggagcaaagtataggaagatttgattgg
ggcacagcaccaccaacaacctttaagcctaacagtcctgatcttgccaagcattacaaa
tctgcctctcctcagtctgcttttcatctcaaacctgacactcccgtttcagtgaaaaag
caccacgtgattcaggaactccctttggacaacacctttgttggtggctgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagccgcaggatgagttctacgaccag
gcctcaccagacaagaggactgaagctgatggcaactccgaccccaactcggatgggcct
cttgggccaagaggattagctgaagcgacagagatgtgtactcaagaatgcctggttttg
ggtcattcagataattgttggatgcctcccagcctgggtccataccaacagccaaagtct
cctatgtctacctttgcatctcagaaagaatgggttaagaaggacaaattagttaatgga
cacacactgaccaggacctggaaagaagatagcaacagaaaccagttcagtgatagaaag
cagtatggttccagtgaaggccatttcaacactggcaatcacatgactgatattcctctg
gccaacttgaagtcttataaacaggcctcaggagctgctgagagtccaaaggagcaccag
ctataa
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integrated database retrieval system
