Tympanuchus pallidicinctus (lesser prairie-chicken): 128092099
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Entry
128092099 CDS
T08967
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpai03041
]
128092099 (DDX1)
03016 Transfer RNA biogenesis [BR:
tpai03016
]
128092099 (DDX1)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128092099 (DDX1)
Spliceosome [BR:
tpai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128092099 (DDX1)
Transfer RNA biogenesis [BR:
tpai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128092099 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
128092099
NCBI-ProteinID:
XP_052561613
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPDGNVVKSQHTGNAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgaaatagctcaagcagtggaggagatg
gattggcttcttcctacggatattcaagcagaatctatcccattgattctgggaggtggt
gatgtactcatggctgcagaaacagggagtggaaaaactggtgctttcagcattccagtt
atccaaattgtgtatgaaactctgaaggaccaaatggaagggaagaaagggaaagcaact
attaaaactggtggggcagtgctcaataaatggcaaatgaacccatatgacagaggatca
gcttttgcaattggatcagatggtctgtgttgtcaaagcagagaagtaaaagaatggcat
ggatgcagagcaactagaggcgtgactaaaggaaagtactactatgaagtgtcttgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactagatttgggtact
gataaatttggctttggatttggtggaactggtaagaagtctcacaacaagcaatttgac
agctacggtgaggaattcaccatgcatgatacaattggatgttacctagacatagataaa
ggacaaattaagttttccaaaaatgggaaagaccttggccttgcatttgaattcccacca
catataaggaaccaggcactctttgcagcttgtgtactgaagaatgctgaattgaaattc
aattttggtgaagaagacttcaagtttccaccaaaagatggctatattggtctttgcaaa
gctcctgatggtaatgttgtaaaatcacaacatacaggaaatgcacaagtggttcaaaca
cagaaccttccaaatgctccaaaagcactgattgtagagccatcgagagagctggcagag
caaaccttgaacaatgtgaagcagttcaaaaaatacattgataatcccaagttaagggaa
ttattgattattggtggagttgctgcaagagatcaactttctgtgctggaacaaggagtg
gatattgtcgttggaactcctggaagactggatgacctggtctcaaccggaaaacttaat
ttatctcaagttagattcctcgttctggatgaagctgatggccttcttcttcaaggttat
tcagatttcattaacaggatccacagccaaattccacagataacttcagatggcaagaga
cttcaggtgattgtgtgctctgcaacactacattcttttgatgtgaaaaaactatctgaa
aagatcatgcattttcctacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccacgtagttgtgattgtaaatcccaaaactgataaactttgggaaaggcttggc
aagaatcatatcagaactgatgaagtacatgcaaaggacaatacacgacctggtgcaaac
actccagaaatgtggtctgaagctatcaaaattctaaaaggagagtacacggttcgggca
atcaaggaacacaagatggaccaggccattattttctgcaggacaaaaatagattgtgat
aatatggagcaatacttcatccaacagggtggaggccctgacaggaaggggcatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcaagaaagaaagcagaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgcagctagaggaatcgat
attcatggtgttccctatgttatcaacgtcacactccctgatgaaaaacagaactatgtt
catcgaattggaagagtaggcagagctgaaaggatgggtctggcaatttcccttgtggca
aaagagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaggggtgttataat
actagactcaaggaagaaggaggttgtaccatatggtacaatgaaatgcagttgctggga
gaaattgaagaacacttaaactgcactatttcccaagttgaaccagacataaaagtacca
gtagatgactttgatgggaaagttacatatggacagaaaagagcccttggtggtggactt
tataaaggccatgtggatattctggcacctacagttcaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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