Tympanuchus pallidicinctus (lesser prairie-chicken): 128092204
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Entry
128092204 CDS
T08967
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128092204 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128092204 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128092204 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128092204 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128092204 (COL4A2)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128092204 (COL4A2)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128092204 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128092204
NCBI-ProteinID:
XP_052561775
LinkDB
All DBs
Position
Unknown
AA seq
1715 aa
AA seq
DB search
MDLSPLPGARVFVCQDVGLLLVLLEVVLLAGRVDAGGKSYTGPCGGRDCSGGCQCFPEKG
ARGQPGQLGSQGLPGPPGLMGIPGLQGPKGHKGERGHPGISGPKGEMGLRGVTGFPGADG
IPGHPGQPGSRGKPGHDGCNGTVGDPGDPGTPGHSGFPGTIGVQGPKGQKGEPYVLPPDI
ASRHRGETGDPGFAGFPGAPGTLGIQGPIGPRGTPGRPGPPGPPGPQGPQGNRGLGFYGE
KGEQGAPGPPGPPGLPTRELIGVPTDKHKGERGEPGQKGEAGFPGVLLFTPEKGEEGVMG
FPGQRGLPGNDGFPGLSGERGFPGLDGQPGQYGPRGGKGEQGEMGPPGPPAYVPYRIPRK
GVRGDPGFPGASGLQGEPGEQGDRGLPGIPGFSDGDADKPGLPGEIGPKGEKGEEGSPAY
QAGPPGFPGKHGEPGLRGPPGPPGTPGSLFGLKGQEGTPGRPGAQGFPGPRGQRGPKGEE
GDCSTCLLSDELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGIPGYAGAKGQSGQEG
FPGPKGEKGDSIYITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGLPGLPGDGIRGL
PGDPGYPGELGPKGFPGETGLPGGGFPGPKGYRGPPGDDGTDGSPGVPGLPGPPGEPGQI
DCGQVIEDFPRGDATDPIWSGGGCVRPPKGSQGKPGLPGATGTKGARGFPGDPGPVGFPG
LNGTRGDPGREGYPGPPGFTGPRGDSGPNGLPGLQGHPGLMGKSGAPGLDGQKGAPGDVL
RAAAGPRGDAGLPGFPGLKGAPGDQGIPGIRGADGNPGLPGPKGDPGLQGLPGLMGLPGT
PGTHGFPGPPGNPGPDGGPGSQGPLGPPGARGEDGEQGFPGLVGIKGQSGDKGETGFPGL
QGIPGVTGPPGISGMDGFPGDKGSRGSPGIDGFKGMPGLKGRPGIKGIKGEFGLFGARGD
KGAQGARGFKGDRGEQGPPGEPPKPKPSMMMKVKGEKGDAGETGTKGFFGIKGSKGMPGL
PGKTGIPGSPGHPSYVPGVKGDIGAKGLTGLKGYPGPTGSPGIRGFPGSTGGRGDKGAPG
SSGHFGSPGSHGEIGEPGDTINLPGMPGLKGEVGVPGLTGLRGGPGQKGEGGDPGLPGIE
GLKGIQGVPGSLGQQGLPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGSRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGPVGDKGEAGEPSRVEGSQGPPGQKGDRGVPGIQ
GPFGIPGQDGLPGPPGISNISGYPGDIGSPGLDGVPGYPGLHGQPGIPAPPGSKGESGRA
GVSGQAGPKGTRGDPGLQGRPGIPGYPGPKGRKGEQGVIGFIGTVGFPGDLGPIGPKGDR
GLTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGSTGPQGSPGDTGPQGPPGEPGFRGLPGE
PGLQGRGGIPAPPGSRGEQGAMGFQGPVGFEGQPGRPGSPGLPGMPGRSVSIGYLLVKHS
QSDQEPMCPIGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICY
YANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQEASIPRCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacctctcgccgcttcccggcgcgcgtgtttttgtttgtcaggacgtggggcttctg
ctggtgctgctggaggtcgtgctgttagctggcagagtcgatgccggtggaaagagttac
acaggaccatgtggaggaagagactgcagtggaggatgtcagtgtttccctgaaaaagga
gcccgtggccagccaggacagcttggatcacaggggctccctggaccaccgggattgatg
ggaatcccaggactgcaaggtcctaaaggtcacaaaggtgaaagaggacatccaggaata
agtggacccaaaggagaaatggggctaagaggagtcactggtttcccaggggcagatggc
attcctggtcatccagggcagccaggatcaagggggaagccaggtcatgatggctgtaat
gggacagtaggtgacccaggtgacccaggaacaccaggacactctggtttccctggtacc
attggagttcaaggaccaaagggccagaaaggggagccctatgtgctaccgccggacatc
gccagccgacatcggggggaaactggggatccaggattcgctggttttccaggagctcca
ggtacactgggtattcaaggacctattggtccaagaggaacaccaggaagacctggacca
ccagggcccccaggaccgcaaggaccacaaggcaacagaggtcttggcttttatggagaa
aaaggtgaacagggcgccccaggtcctccaggtccacctgggcttcccacaagagaactg
attggtgtccccactgacaaacacaaaggtgaaagaggagagcctggacaaaaaggggaa
gctggatttccaggtgtacttctcttcactcctgaaaaaggtgaagaaggggtaatgggc
ttcccaggacaaaggggactgcctggtaacgatggttttccaggacttagtggagaaaga
ggttttccaggattggatggtcaaccaggtcaatatggtcctagaggaggcaagggggag
cagggtgagatgggtcctccaggaccacctgcctatgttccttaccgcattccaagaaaa
ggtgtaagaggtgatccaggctttccaggtgcttctggactccagggagaaccaggagag
cagggtgatcgtgggctgcctggtattccaggattctctgatggagatgcagataagcca
ggcttacctggagagataggaccaaaaggtgaaaaaggcgaagaaggatctcctgcttat
caagcaggcccacctgggtttccaggtaaacatggcgaaccaggactccgtggtccacct
ggtccccctggaactccaggttctctctttggattaaaaggacaggaagggacaccaggt
agacctggtgcacaaggttttcctgggccaagaggacaaagaggacctaaaggcgaagaa
ggtgactgcagtacatgccttttgagtgatgaactcagaaggggctctactggcccccgt
ggccctcctggttttccaggaacccctggccagcctgggagaaaaggagaacctggtgat
caaggtccacatggtattcctggctacgctggagcaaaaggacaatcgggccaagaagga
tttcctggaccaaaaggagaaaagggagattctatatacataactactaaaggcaccaaa
ggaatccgaggagatcctggacttcctggtatcagaggggaagatggtttcccaggcaga
gatggattagatggtttaccaggactgcctggccttccgggtgatggtatcagaggtctc
cctggggatcctggttacccaggagaattaggcccaaagggcttcccaggagaaacaggc
ctgccaggtggaggatttcctggcccaaaagggtaccgtggtcctccaggtgatgatgga
acagacggaagccctggggttccaggtctgcctggtccaccaggagagcctggccaaata
gactgtgggcaggtgattgaagattttcctagaggagatgcaactgatccaatatggtca
ggtggaggctgtgtgaggccaccaaagggatctcaaggcaagccagggctgccaggagcc
acaggtactaaaggtgcaagaggattcccgggtgatccaggcccagtgggattcccaggg
ctaaatggtacacgaggtgatccgggtcgggaaggatacccaggtcctccaggctttact
gggccccgaggagacagcggcccaaatggcttacctggactacagggacatccaggtctt
atgggaaagtctggtgctccaggactggacggacagaagggtgctcctggtgatgttttg
agagcagcagcaggtcctcggggggatgctgggctgcctggcttccctggcttgaaaggt
gcaccaggagatcaaggaataccaggaattagaggagcggatggtaacccaggattgcca
ggccccaaaggtgatccagggctgcaaggtctccctggtttgatgggtttaccaggaaca
ccaggaactcatggattcccagggccaccaggaaaccccggccctgatggtggacctggc
tctcaaggaccccttggtccaccaggtgcaaggggagaagatggtgagcaaggctttcct
ggtctggtgggcataaaaggtcagtctggtgacaaaggtgaaacaggtttcccaggatta
caaggtatccctggcgtgactggtccccctggcattagtggaatggatggatttccagga
gacaaaggctcaagaggttcacctggcattgatggtttcaaaggcatgccaggcctgaaa
ggaagaccaggaatcaaaggaatcaaaggagaatttggcttatttggagctcggggtgat
aaaggcgcgcagggtgctcgaggctttaaaggtgaccgtggagaacaaggtcccccagga
gagcccccaaagccaaagcctagcatgatgatgaaagttaaaggtgaaaaaggagatgct
ggagaaactggcaccaagggattctttggcataaaaggtagcaagggaatgccaggcctt
cctggtaagacaggaattcctgggtccccagggcaccccagttatgtgcctggtgtgaag
ggggacatcggtgcaaaagggctgacgggtctgaaagggtatcctggtccaactggctct
ccaggcatcagaggcttccctggcagcacaggaggcaggggagataagggtgccccagga
agttcgggtcattttggttctcctggttcccatggtgaaattggtgagccgggcgatact
ataaacttaccaggaatgccaggccttaaaggggaagttggtgtgccgggtcttacaggc
ttaagaggaggccctggacaaaaaggcgaaggaggtgatcctggtttacctggcattgaa
ggcctcaagggcatacagggtgtacctggctccttgggacagcaaggtttgccaggactg
gtcggccctccagggcagcaaggaagccctggaacacctggattccaaggagaaaaagga
actcctggctggcctggcttaccaggacaagcaggcttacctggctcaagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatggctat
ggctctgcaggcttcccaggtcctgtgggtgacaaaggagaagcaggagagccgagcaga
gtggagggcagccaaggcccgccgggtcagaagggagacagaggtgttccaggaatccaa
ggaccctttggcattcctgggcaggatggacttccaggccctcctgggatttccaatata
tcaggatatcctggtgatataggttcaccaggtctagatggagtgccaggctatccagga
ctacatgggcagcctggaataccagctccaccgggaagcaagggagaaagtggacgagca
ggcgtgagcggacaagctggtcccaaagggacaagaggtgatcctggactacaagggaga
cctgggattcccggttatcctggaccaaaaggtcgtaagggtgaacaaggtgtcattggc
tttattggcacagtaggatttccaggtgatctgggacccatcggacccaagggggataga
ggacttactggctttcagggccctccaggttctcctgggttgccgcctcttcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaagtacaggacctcagggaagtcca
ggtgatacaggacctcaaggtccaccaggagaaccaggtttcagaggcttacctggagaa
ccaggactccagggcagaggtggcattccagctcctcctggatccagaggtgaacaagga
gcaatggggtttcaaggtccagtgggatttgaaggccagccaggtcgccccggtagcccc
gggctgccaggcatgccgggtcgcagcgttagcatcggctacctgctggtgaagcacagc
cagtctgaccaagagccaatgtgcccaattggcatgaacaaactctggagtggctacagc
ctcctgtacttcgagggacaagagaaagcacacaaccaggacctagggctggctggctcc
tgcttggctcgtttcagtacaatgccattcctctactgtaaccctggggatatttgttat
tatgcaaatcgaaatgacaaatcctactggctctcaactacagcacctcttccaatgatg
cctgtggcagaagaagaaattaggccatatatcagccgctgctctgtgtgtgaggcccca
gctgtggcaattgctgtccatagccaagaagcttctattcctcgctgccccgaaggctgg
cgcagtttgtggattggatattccttccttatgcacactgcagccggtgatgaaggtgga
ggacagtcgctggtctctcctgggagctgcctggaagatttcagggctactcctttcatc
gagtgcaatggggcacgtggaacctgtcattactttgccaataagtacagcttctggctc
actacgattgaccagcccttccaaagcaagccctcggcagatacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaaaaatttatag
DBGET
integrated database retrieval system
