Tympanuchus pallidicinctus (lesser prairie-chicken): 128092204
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Entry
128092204 CDS
T08967
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04382
Cornified envelope formation
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
tpai04518
Integrin signaling
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128092204 (COL4A2)
04518 Integrin signaling
128092204 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128092204 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128092204 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128092204 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128092204 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128092204 (COL4A2)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128092204 (COL4A2)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128092204 (COL4A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128092204
NCBI-ProteinID:
XP_052561775
LinkDB
All DBs
Position
Unknown
AA seq
1715 aa
AA seq
DB search
MDLSPLPGARVFVCQDVGLLLVLLEVVLLAGRVDAGGKSYTGPCGGRDCSGGCQCFPEKG
ARGQPGQLGSQGLPGPPGLMGIPGLQGPKGHKGERGHPGISGPKGEMGLRGVTGFPGADG
IPGHPGQPGSRGKPGHDGCNGTVGDPGDPGTPGHSGFPGTIGVQGPKGQKGEPYVLPPDI
ASRHRGETGDPGFAGFPGAPGTLGIQGPIGPRGTPGRPGPPGPPGPQGPQGNRGLGFYGE
KGEQGAPGPPGPPGLPTRELIGVPTDKHKGERGEPGQKGEAGFPGVLLFTPEKGEEGVMG
FPGQRGLPGNDGFPGLSGERGFPGLDGQPGQYGPRGGKGEQGEMGPPGPPAYVPYRIPRK
GVRGDPGFPGASGLQGEPGEQGDRGLPGIPGFSDGDADKPGLPGEIGPKGEKGEEGSPAY
QAGPPGFPGKHGEPGLRGPPGPPGTPGSLFGLKGQEGTPGRPGAQGFPGPRGQRGPKGEE
GDCSTCLLSDELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGIPGYAGAKGQSGQEG
FPGPKGEKGDSIYITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGLPGLPGDGIRGL
PGDPGYPGELGPKGFPGETGLPGGGFPGPKGYRGPPGDDGTDGSPGVPGLPGPPGEPGQI
DCGQVIEDFPRGDATDPIWSGGGCVRPPKGSQGKPGLPGATGTKGARGFPGDPGPVGFPG
LNGTRGDPGREGYPGPPGFTGPRGDSGPNGLPGLQGHPGLMGKSGAPGLDGQKGAPGDVL
RAAAGPRGDAGLPGFPGLKGAPGDQGIPGIRGADGNPGLPGPKGDPGLQGLPGLMGLPGT
PGTHGFPGPPGNPGPDGGPGSQGPLGPPGARGEDGEQGFPGLVGIKGQSGDKGETGFPGL
QGIPGVTGPPGISGMDGFPGDKGSRGSPGIDGFKGMPGLKGRPGIKGIKGEFGLFGARGD
KGAQGARGFKGDRGEQGPPGEPPKPKPSMMMKVKGEKGDAGETGTKGFFGIKGSKGMPGL
PGKTGIPGSPGHPSYVPGVKGDIGAKGLTGLKGYPGPTGSPGIRGFPGSTGGRGDKGAPG
SSGHFGSPGSHGEIGEPGDTINLPGMPGLKGEVGVPGLTGLRGGPGQKGEGGDPGLPGIE
GLKGIQGVPGSLGQQGLPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGSRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGPVGDKGEAGEPSRVEGSQGPPGQKGDRGVPGIQ
GPFGIPGQDGLPGPPGISNISGYPGDIGSPGLDGVPGYPGLHGQPGIPAPPGSKGESGRA
GVSGQAGPKGTRGDPGLQGRPGIPGYPGPKGRKGEQGVIGFIGTVGFPGDLGPIGPKGDR
GLTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGSTGPQGSPGDTGPQGPPGEPGFRGLPGE
PGLQGRGGIPAPPGSRGEQGAMGFQGPVGFEGQPGRPGSPGLPGMPGRSVSIGYLLVKHS
QSDQEPMCPIGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICY
YANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQEASIPRCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacctctcgccgcttcccggcgcgcgtgtttttgtttgtcaggacgtggggcttctg
ctggtgctgctggaggtcgtgctgttagctggcagagtcgatgccggtggaaagagttac
acaggaccatgtggaggaagagactgcagtggaggatgtcagtgtttccctgaaaaagga
gcccgtggccagccaggacagcttggatcacaggggctccctggaccaccgggattgatg
ggaatcccaggactgcaaggtcctaaaggtcacaaaggtgaaagaggacatccaggaata
agtggacccaaaggagaaatggggctaagaggagtcactggtttcccaggggcagatggc
attcctggtcatccagggcagccaggatcaagggggaagccaggtcatgatggctgtaat
gggacagtaggtgacccaggtgacccaggaacaccaggacactctggtttccctggtacc
attggagttcaaggaccaaagggccagaaaggggagccctatgtgctaccgccggacatc
gccagccgacatcggggggaaactggggatccaggattcgctggttttccaggagctcca
ggtacactgggtattcaaggacctattggtccaagaggaacaccaggaagacctggacca
ccagggcccccaggaccgcaaggaccacaaggcaacagaggtcttggcttttatggagaa
aaaggtgaacagggcgccccaggtcctccaggtccacctgggcttcccacaagagaactg
attggtgtccccactgacaaacacaaaggtgaaagaggagagcctggacaaaaaggggaa
gctggatttccaggtgtacttctcttcactcctgaaaaaggtgaagaaggggtaatgggc
ttcccaggacaaaggggactgcctggtaacgatggttttccaggacttagtggagaaaga
ggttttccaggattggatggtcaaccaggtcaatatggtcctagaggaggcaagggggag
cagggtgagatgggtcctccaggaccacctgcctatgttccttaccgcattccaagaaaa
ggtgtaagaggtgatccaggctttccaggtgcttctggactccagggagaaccaggagag
cagggtgatcgtgggctgcctggtattccaggattctctgatggagatgcagataagcca
ggcttacctggagagataggaccaaaaggtgaaaaaggcgaagaaggatctcctgcttat
caagcaggcccacctgggtttccaggtaaacatggcgaaccaggactccgtggtccacct
ggtccccctggaactccaggttctctctttggattaaaaggacaggaagggacaccaggt
agacctggtgcacaaggttttcctgggccaagaggacaaagaggacctaaaggcgaagaa
ggtgactgcagtacatgccttttgagtgatgaactcagaaggggctctactggcccccgt
ggccctcctggttttccaggaacccctggccagcctgggagaaaaggagaacctggtgat
caaggtccacatggtattcctggctacgctggagcaaaaggacaatcgggccaagaagga
tttcctggaccaaaaggagaaaagggagattctatatacataactactaaaggcaccaaa
ggaatccgaggagatcctggacttcctggtatcagaggggaagatggtttcccaggcaga
gatggattagatggtttaccaggactgcctggccttccgggtgatggtatcagaggtctc
cctggggatcctggttacccaggagaattaggcccaaagggcttcccaggagaaacaggc
ctgccaggtggaggatttcctggcccaaaagggtaccgtggtcctccaggtgatgatgga
acagacggaagccctggggttccaggtctgcctggtccaccaggagagcctggccaaata
gactgtgggcaggtgattgaagattttcctagaggagatgcaactgatccaatatggtca
ggtggaggctgtgtgaggccaccaaagggatctcaaggcaagccagggctgccaggagcc
acaggtactaaaggtgcaagaggattcccgggtgatccaggcccagtgggattcccaggg
ctaaatggtacacgaggtgatccgggtcgggaaggatacccaggtcctccaggctttact
gggccccgaggagacagcggcccaaatggcttacctggactacagggacatccaggtctt
atgggaaagtctggtgctccaggactggacggacagaagggtgctcctggtgatgttttg
agagcagcagcaggtcctcggggggatgctgggctgcctggcttccctggcttgaaaggt
gcaccaggagatcaaggaataccaggaattagaggagcggatggtaacccaggattgcca
ggccccaaaggtgatccagggctgcaaggtctccctggtttgatgggtttaccaggaaca
ccaggaactcatggattcccagggccaccaggaaaccccggccctgatggtggacctggc
tctcaaggaccccttggtccaccaggtgcaaggggagaagatggtgagcaaggctttcct
ggtctggtgggcataaaaggtcagtctggtgacaaaggtgaaacaggtttcccaggatta
caaggtatccctggcgtgactggtccccctggcattagtggaatggatggatttccagga
gacaaaggctcaagaggttcacctggcattgatggtttcaaaggcatgccaggcctgaaa
ggaagaccaggaatcaaaggaatcaaaggagaatttggcttatttggagctcggggtgat
aaaggcgcgcagggtgctcgaggctttaaaggtgaccgtggagaacaaggtcccccagga
gagcccccaaagccaaagcctagcatgatgatgaaagttaaaggtgaaaaaggagatgct
ggagaaactggcaccaagggattctttggcataaaaggtagcaagggaatgccaggcctt
cctggtaagacaggaattcctgggtccccagggcaccccagttatgtgcctggtgtgaag
ggggacatcggtgcaaaagggctgacgggtctgaaagggtatcctggtccaactggctct
ccaggcatcagaggcttccctggcagcacaggaggcaggggagataagggtgccccagga
agttcgggtcattttggttctcctggttcccatggtgaaattggtgagccgggcgatact
ataaacttaccaggaatgccaggccttaaaggggaagttggtgtgccgggtcttacaggc
ttaagaggaggccctggacaaaaaggcgaaggaggtgatcctggtttacctggcattgaa
ggcctcaagggcatacagggtgtacctggctccttgggacagcaaggtttgccaggactg
gtcggccctccagggcagcaaggaagccctggaacacctggattccaaggagaaaaagga
actcctggctggcctggcttaccaggacaagcaggcttacctggctcaagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatggctat
ggctctgcaggcttcccaggtcctgtgggtgacaaaggagaagcaggagagccgagcaga
gtggagggcagccaaggcccgccgggtcagaagggagacagaggtgttccaggaatccaa
ggaccctttggcattcctgggcaggatggacttccaggccctcctgggatttccaatata
tcaggatatcctggtgatataggttcaccaggtctagatggagtgccaggctatccagga
ctacatgggcagcctggaataccagctccaccgggaagcaagggagaaagtggacgagca
ggcgtgagcggacaagctggtcccaaagggacaagaggtgatcctggactacaagggaga
cctgggattcccggttatcctggaccaaaaggtcgtaagggtgaacaaggtgtcattggc
tttattggcacagtaggatttccaggtgatctgggacccatcggacccaagggggataga
ggacttactggctttcagggccctccaggttctcctgggttgccgcctcttcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaagtacaggacctcagggaagtcca
ggtgatacaggacctcaaggtccaccaggagaaccaggtttcagaggcttacctggagaa
ccaggactccagggcagaggtggcattccagctcctcctggatccagaggtgaacaagga
gcaatggggtttcaaggtccagtgggatttgaaggccagccaggtcgccccggtagcccc
gggctgccaggcatgccgggtcgcagcgttagcatcggctacctgctggtgaagcacagc
cagtctgaccaagagccaatgtgcccaattggcatgaacaaactctggagtggctacagc
ctcctgtacttcgagggacaagagaaagcacacaaccaggacctagggctggctggctcc
tgcttggctcgtttcagtacaatgccattcctctactgtaaccctggggatatttgttat
tatgcaaatcgaaatgacaaatcctactggctctcaactacagcacctcttccaatgatg
cctgtggcagaagaagaaattaggccatatatcagccgctgctctgtgtgtgaggcccca
gctgtggcaattgctgtccatagccaagaagcttctattcctcgctgccccgaaggctgg
cgcagtttgtggattggatattccttccttatgcacactgcagccggtgatgaaggtgga
ggacagtcgctggtctctcctgggagctgcctggaagatttcagggctactcctttcatc
gagtgcaatggggcacgtggaacctgtcattactttgccaataagtacagcttctggctc
actacgattgaccagcccttccaaagcaagccctcggcagatacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaaaaatttatag
DBGET
integrated database retrieval system
