Thrips palmi (melon thrips): 117639220
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Entry
117639220 CDS
T08251
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
tpal
Thrips palmi (melon thrips)
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpal03021
]
117639220
03036 Chromosome and associated proteins [BR:
tpal03036
]
117639220
Transcription machinery [BR:
tpal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117639220
Chromosome and associated proteins [BR:
tpal03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
117639220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
SH2
Tex_YqgF
HHH_9
HHH_3
Spt6_S1
Tex_N
OB_RRP5_4th
S1_RRP5
HTH_10
Motif
Other DBs
NCBI-GeneID:
117639220
NCBI-ProteinID:
XP_034230564
UniProt:
A0A6P8Y9X4
LinkDB
All DBs
Position
Unknown
AA seq
1871 aa
AA seq
DB search
MSDFLDSEAEESEDEEFEKKTSKRKAIDSDDDEEDDDGDGEDIKDLIDDNPIEESGDESD
ASGGSKKRKKSDDEEDELDDRLEDEDYDLLEENLGVKVARTKRFKRLKRIQAEESDDEQE
EDRGDERDAVANELFEGSDHEQEDREEDRSSERRDDTVGDFDEEGDEEGDDYSDADDFIV
DDEGRPIRDKQRKRKPIFTDHALQQAQDIFGVDFDYDEFDKYDQEEEEYEEDEDYQDEEE
GGRRRKAKKKASKKASKKSIFEIYEPSELKRGHFTDLDNQIRNTDIPERMQLRDTPITPE
TDEKLEEEAEWIYKHAFCKPTVSTQQGAGTDKENTRKEPTSTVYKIKKALDFMRNQSLEV
PFIAFYRKEYVSPELTLSDLWKVYKYDEKWCQLLARKQTLIKLFEKMRDYQGEQLMKDNN
ADIPEDVRVLTDEDIFRVMGVQTPEELRDVHMHFLLYYAHEVPAMQEAFKAKEKLERQQR
ARRNRRERRKKKTIINEDGEEEEVTDEDAEDDDVDPEDEDEEEEEAPQEQVKQAVRSGPY
SMCRKARLAGFAKRFGLTPEQFAENLRDNYQRHEVEQESIEPLALAKEYLSAQFSNADEA
LKAVKYMVAAQLSREPLVRKCVREALFERSKIDVLPTKKGIKEIDEYHPIYSMKYLKGKP
VRDLSNEQFLKLVMAEEEKNITISFSDQIEGLTSSSFIEEAKQLYLRDEFSKHVQEWNNV
RVECVELALRKMLIPDLRKELKSLLLNEAKDCVLRACCRRLYNWIKIAPYSVDFPDEDED
EWDTSKGLRVMGVAYEPDFSQAAFACMVAPDGEVTDYLRLPSLLKRLNGFREGDKLQKEA
DLTALRNFISTKKPHVIAVGGESRDALMVVQDLKNVVKDLIEDDQFPTINVEIVDNDLAK
IYANSIKAQNEFRDYPLQLRQAISLARRLQDPLTEYSQLCTTDEEILCLRFHPLQDQVKD
DLLEALYLEFVNRTNEVGVDINVAVQTGQTANLVQFVCGLGPRKGAALIKLLKQTNQRLE
NRTQLVTACHMGPKVFINCAGFIRIDTNSLGDSTEAYVEVLDGSRVHPEAYEWARKMAVD
ALEYDDEDANPAGALEEILESPERLKDLDLDAFAEELERQGFGNKSITLYDIRNELNHRY
KDMRTPFSSPNPEEVFDILTKESPETFYIGKMILATVMGIQHRKPQHEQLDNANPVRNDE
TGLWQCPFCLKNDFPELSEVWNHFDAETCPGKATGVKLRLDNGIQGYIHIKNLSDKHVSN
PEERVKHNQIIHCRITKIDVTRFSVECTSKTSDLMDTNHEWRPALDPYYDKEKEAKDKKT
EEEAKKMKQQHAYIKRVIVHPSFHNISFKEAEKLMANLDQGECIVRPSSKGSDHLTVTWK
VADNIYQHIDVREEKKENSFSLGQSLWIGGDEFEDLDEIIARHVSPMASHARDLLSFKYY
KETMGGKKDKAEEILKEEKRRNPGKIHYVISASQSLPGKFMLSYMLSRCRHEYVTVTPEG
FRFRQQIFDNLNALFKWFKEHFRDPIPGSTPSTPRGGMTSRTPYPATPSLSMANIDPAIQ
RVAQNLPTHMLHSLSQVATQTPHYSQTPGVYGASVHAYPNTPYTPSGQTPFMTPYATPHH
STQTPRYGQPTPSQATQGFLHPGSVTPSHRTPSHRPAPTPTPGSHSGHPGSLSAHPGSLA
AHPGSHSAHPGSHSRHPPSSHSAHGSMSAGGRGMQQQGGDPSDWKKKAEQWMRQQQPGSV
TPRQGQGTPRFDDGRRSTTPRYDGTPRGSVSGSPYVPGGGSKSGTPHYDMDMNGTPRSES
SRSGYKTSRPPGSSGHFSRSGTPRSSPAVGYGHPRASPHGSVSARSTPRTIASPESMVES
TGDATPLYDEH
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactttcttgattcagaagccgaggagagtgaagatgaggagtttgaaaagaaa
acatctaaaaggaaagccatcgacagcgatgatgatgaagaggatgatgatggggatggc
gaagatattaaggatctgattgacgacaatcccattgaggaaagtggggatgaaagtgac
gcatccggagggtctaagaaaagaaagaaaagtgatgatgaagaagatgaacttgatgat
aggttggaagatgaagattatgatttgcttgaagaaaacttgggtgttaaagtggcaaga
acaaagcgctttaaacgcttaaaaagaatacaagcagaagaatctgatgatgagcaggaa
gaagatcgaggtgatgaaagagatgctgttgccaatgagctttttgaaggatctgatcat
gagcaggaagacagggaggaagaccgttcatcagagcgccgtgatgatactgtaggggat
tttgatgaagagggtgacgaagaaggagatgattattctgatgcagatgattttattgtt
gatgatgaaggacgtcctatcagggataaacaacgtaaacgaaaaccaattttcactgat
catgctttacaacaagctcaagatatttttggcgttgattttgattatgatgagtttgat
aagtatgaccaggaggaggaagaatatgaagaagatgaagactatcaggatgaggaagaa
gggggaaggaggagaaaagccaagaagaaagcatcaaaaaaggcttccaagaaatccatt
tttgagatttatgagcccagtgaactcaaaaggggtcactttactgatttggataaccag
atccgtaacactgatatccccgaaagaatgcaactgcgggatactcctatcacacctgaa
actgatgagaaactagaagaggaagcagaatggatttacaagcatgctttctgcaaacct
acagtgtcaactcagcagggagctggtacagataaagaaaacacaagaaaagaacctact
tccactgtgtataaaataaagaaagccttagattttatgcgcaaccaaagtttagaagtt
ccttttattgcattttaccgtaaggagtatgtgtcaccagaactgactttgagtgattta
tggaaggtttacaaatacgatgaaaagtggtgtcagttactagctcgcaaacaaacacta
ataaaattatttgagaagatgcgagattatcaaggtgagcaacttatgaaagataataat
gctgatattccagaagatgtacgagtgcttaccgatgaggatatttttcgagtcatgggt
gttcagactccagaagagctgagagatgtgcatatgcactttctcctctattatgcacat
gaagtcccagccatgcaggaggctttcaaggcgaaggagaagctagagcggcagcaaagg
gcccgacgcaatcggcgtgagcggcgcaagaaaaagaccatcatcaatgaggatggggag
gaggaggaagtcactgatgaagatgccgaggatgatgatgttgaccctgaagacgaagat
gaggaagaagaggaggcccctcaagagcaagtgaagcaagccgtgaggtctggtccttac
agcatgtgccgtaaggcacgcctagcaggctttgccaaaagatttggtcttactcctgag
cagtttgctgaaaatttacgcgacaactatcagcgtcatgaggtggagcaggagtccata
gaaccactagcattagctaaggaatatctttctgctcaattctcaaatgctgatgaggct
ctgaaggctgtcaagtacatggttgccgcacaattatcccgagaacctttggtcagaaaa
tgtgttagggaagctctctttgagcgttctaagatagatgtcttgccaaccaaaaaagga
atcaaggagattgatgagtaccatcctatctatagtatgaaatatctgaaaggaaagcct
gtgcgtgatttgtctaacgagcagtttttgaagcttgtcatggcagaggaagaaaaaaat
atcacaatatcattctctgaccaaatagagggtttaaccagtagctcctttattgaagaa
gctaagcagctctacctcagggatgagtttagtaagcatgttcaggagtggaataatgtg
agggtcgaatgtgttgaacttgctttgcgcaaaatgttgataccagatttgagaaaagaa
ctgaaaagtcttctcttaaatgaagctaaagactgtgtgctgcgtgcttgctgtcgccgt
ttgtacaattggatcaagattgctccttacagtgttgatttccccgatgaagatgaagat
gaatgggacacgtccaagggcctacgtgtaatgggtgttgcatatgagcctgatttttct
caagctgcgtttgcatgtatggtagctccagatggggaagtcactgattatttacgttta
cctagcttattaaaaagactcaatggttttagagaaggtgataaacttcaaaaggaggcc
gaccttacagctttacgtaattttatctcaacaaagaaacctcatgttattgctgttggt
ggtgaaagtagggatgctcttatggtggtgcaagatctaaaaaatgttgtaaaggactta
atagaagatgaccaattccccacaataaatgtagaaatagtggataatgatcttgccaaa
atttatgccaattcaattaaagcacagaatgaatttagagactaccctctccaacttcga
caagctatttctcttgctcgacgtttacaagatcctcttactgaatattctcaactctgc
acaactgatgaagaaatcttgtgcctacgatttcatcctctacaggaccaggttaaggat
gacttattagaggcactctatttggagttcgtcaataggactaatgaagtgggcgtcgat
attaatgttgctgtccagaccgggcaaacagctaatcttgtgcaatttgtttgtggtctt
ggtcctcgaaaaggagctgctctcataaaattgttaaaacaaaccaatcaacgtcttgaa
aatagaactcagttggttacagcatgtcatatgggacctaaggttttcatcaactgtgct
ggattcattcgcattgacacaaattctcttggagacagcactgaagcctatgttgaagtt
cttgacggatctagagtgcacccagaggcttatgagtgggctagaaaaatggcagtggat
gcacttgagtacgatgatgaggatgccaaccctgctggagcattagaagaaattttagaa
tcaccagaaaggttaaaggatcttgatcttgatgcctttgctgaagaattagaaagacaa
gggtttggtaacaagagcataactttatatgacataaggaatgaactgaatcatagatac
aaggatatgcgtacaccattctcttcacctaaccctgaagaagtctttgacatcctaact
aaagaaagccctgagacattttatattggtaaaatgattcttgcaactgtcatgggaata
caacaccggaagccacaacatgaacagctggataatgcaaatccagtaagaaatgatgaa
acgggcttatggcagtgtcctttctgtttgaaaaatgacttccctgagctgtctgaggtt
tggaatcattttgatgctgaaacctgtcctggaaaggcaactggtgtcaagttgcgtctt
gataatggcattcagggttatattcacattaagaatctgtcagacaaacacgttagcaat
cctgaagaaagagtaaagcacaatcaaatcattcactgccgaattacaaaaatagatgtt
acaaggttctcagttgaatgtacatctaaaacttcggatttgatggatacaaatcatgaa
tggagacctgctctagatccatattatgataaagaaaaagaagccaaggataaaaagact
gaggaagaagcgaaaaagatgaagcaacaacatgcctacataaagcgtgttattgttcat
ccttctttccacaacatttctttcaaggaagctgagaaactcatggctaatcttgatcaa
ggggaatgtattgtccgaccatctagcaagggatcagatcatcttactgtcacatggaaa
gtagctgacaatatttaccaacatatcgatgtaagagaggaaaagaaagaaaattccttc
tcgcttggacagtctctgtggattggtggagacgaattcgaagacctggacgaaattatc
gctaggcatgttagtcccatggcttctcatgctcgtgatttattaagttttaaatattac
aaggaaactatgggtggcaaaaaagataaggctgaagaaatattaaaggaagaaaaacgt
agaaaccctggcaaaattcactatgtaatttcagcttcacaatcacttccaggaaagttc
atgttgtcttacatgctgagtcggtgcaggcatgaatatgtcactgtgacaccagaagga
ttccgctttaggcaacaaatatttgataatttaaatgccctcttcaagtggttcaaagaa
cactttagagaccctatccctggtagcactcccagcacaccacgtggaggaatgaccagc
cgaacaccttatcctgccacccctagcctcagcatggcgaatattgatcctgctattcag
agagtcgctcaaaatctacccacacacatgctgcacagcttgtcccaggtggcgacacaa
acgccacactactcacagactcctggtgtttatggtgccagtgtgcatgcttaccccaac
actccttacactccttctgggcagacgcccttcatgacgccttacgccacgccgcaccac
tcgacccagactccgcggtatgggcaacccactccgtcccaagcgacgcagggcttcctt
caccccgggtcggtgacgccctcgcaccgcactccatcgcacaggccggccccgactccc
acccctggctcccactcgggacacccagggtcgctatcagcgcaccctggttcccttgct
gcccaccccggctcacactcggcccaccctggctcacactccagacacccgccttcttcg
cactcggcccacggcagtatgagtgctggaggtcgaggaatgcagcagcagggtggagac
ccttcagactggaagaagaaggctgagcaatggatgcggcagcagcaaccaggatctgtg
acacctaggcaaggtcagggcactcctcgctttgatgatggcagaagatcgaccacacca
cgatacgatggcactccaaggggctcagtgtcagggagtccatacgttcctggtggagga
agcaagtcaggcactccgcattacgatatggacatgaatggaactccccgtagtgaatcg
agtcgttctggctacaaaacctcgaggcctccgggtagcagtggccacttcagcagaagt
ggaactccccgttccagcccagcagtgggctatggtcaccctcgcgcgtcacctcacggc
tcagtatctgccagatccactccccgaaccatagcatctccagagtctatggttgaaagt
acaggagacgcgacaccgctctatgacgagcactga
DBGET
integrated database retrieval system
