Thrips palmi (melon thrips): 117639550
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Entry
117639550 CDS
T08251
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpal
Thrips palmi (melon thrips)
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpal03016
]
117639550
Enzymes [BR:
tpal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117639550
Transfer RNA biogenesis [BR:
tpal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117639550
Prokaryotic type
tRNA splicing ligases
117639550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
117639550
NCBI-ProteinID:
XP_034231224
UniProt:
A0A6P8Y492
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVREYNDELKFLERIDDNSWRIKKGFQPNMNVEGVFYVNSALEKLMFDELRNACRPGMV
GGFLPGMKQIANVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPLSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSMFDHIPVGVGSKGIIPMTATNLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEDKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQINTNDRQLACARIN
SPEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFHMTPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTERGM
QETFGSTCHGAGRALSRAKSRRNLDYTDVLKKLEQQGISIRVASLKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgagggagtacaatgatgagcttaaattcctcgagagaattgatgacaactca
tggaggattaagaaaggatttcagccgaatatgaatgtggagggagtcttttatgtgaat
tcggctctcgaaaaacttatgtttgatgagcttcgcaatgcttgtcgacctggtatggtg
ggtggctttcttccgggaatgaaacaaattgcaaatgttgctgccctacctggtattgtg
catcgttcaattggtttgcccgatgttcattccgggtatggatttgcaattggtaatatg
gcagcatttgacatgaatgatcccttgtcaattgtatcgcctggtggagtgggctttgac
ataaactgcggagttcgtcttttgaggacaaatttgtttgaaaaggacgtccaaccggtg
aaggaacaacttgctcagagtatgtttgaccacattcccgttggcgttggctcaaaagga
attatacccatgactgcaacaaatcttgaggaagcgttagaaatggggatggactggtca
ctccgagagggctatatttgggctgaggacaaggaacactgtgaggagtatggacgaatg
ttaaatgctgacccatctaaagttagtcttagggcaaagaagagaggtttgcctcagctt
ggcactcttggggcaggtaaccactacgctgaaattcaagttgtagatgaaatttatgac
aagtgggcagcaagtaaaatgggtattgaagacaaaggacaagtatgtgtgatgattcat
tcaggaagccgtggttttggacatcaagtcgcaacagatgccttagtacagatggaaaaa
gccatgaagagggaccaaatcaacacaaatgaccgccagttggcttgtgctcgcatcaac
tcgcccgaaggtcaagattatttaaaggccatggctgctgcagccaattttgcttgggtc
aatagaagctcaatgaccttcctctccagacaggcatttgccaagcaatttcacatgaca
ccggatgatttggatatgcatgtcatttatgatgtatctcataatatcgctaaggtagaa
gaacacatagtagatggcaaacaaaaaacattgctagtgcatagaaaggggtctactcgg
gcattccctccccaccatcccttaataccagtagattaccaattaactggccaacctgtg
ctgattggtggaacaatgggaacctgcagctatgtactcactggtactgagcgaggcatg
caagaaacctttggatccacttgtcatggagcgggacgtgcattgtctagagccaaatca
agacgcaatttggactacacagatgtattgaaaaaattggaacagcagggaatctcaatt
agagttgcatcattgaagctggtgatggaggaggctccagagtcttacaaaaatgtgact
gatgttgtagatacgtgccatgctgcaggtattagtaagaagtgcatcaaacttcgtcca
attgctgtgattaaaggctaa
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