Thrips palmi (melon thrips): 117639781
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Entry
117639781 CDS
T08251
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117639781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117639781
03041 Spliceosome [BR:
tpal03041
]
117639781
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117639781
Spliceosome [BR:
tpal03041
]
Complex B
Other components
Prp19-related factors
117639781
Complex C
117639781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_10
Mad3_BUB1_I
TPR_12
NRDE-2
DHR-2_Lobe_A
TPR_7
PPR
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
117639781
NCBI-ProteinID:
XP_034231576
UniProt:
A0A6P8Y6F0
LinkDB
All DBs
Position
Unknown
AA seq
860 aa
AA seq
DB search
MRMPEIARKDLHIVFSEEDLPYEEDILRNPFSVKHWLRYIDHKKSAPKNAINIIYERALK
ELPGSYKLWYNYLKLRRRQTKGRCVIDPIFEDVNNAFERALVFMHKMPRIWMDYCQFLMD
QNLITRTRQSFDRALRALPVTQHHRIWPIYLTFVKKHDIPETAVRVFRRYLKLCPEDTED
YIEYLSDINRLDEAALKLAFIVNHDDFVSKHGKSNHQLWNELCELISKNPDQVRSLNVDA
IIRGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVKTVRDFTQVFDAYAQF
EELSLSKRMEQAASNPNPTEEDDLDLELRLARFEHLMERRPLLLNSVLLRQNPHNVHEWH
KRVKLNEGQPHQIIATYTEAVQTVDPKLAVGKLNTLWVSFAKFYEENNQLDDARVVFEKA
TQVAYVKVEDLAAVWCEWAEMEIRHEKPETALKLMHKATVMPNHKAAYHDETETVQNRLY
KSLKLWSLYADLEESFGSFKSCKSVYDRIIDLKIATPQIIINYGLFLEEQNYFEEAFKAY
EKGIALFRWPNVYDIWNTYLTKFLRRYGGTKLERARDLFEQCLEKCPPKFAKALYLLYAK
LEEEHGLARHAMAVYERATGAVQPEEMFEMFNIYIKKAAEIYGVPKTRQIYEKAIEMLDD
NNSREMCMRFAEMETKLGEVDRARAIYAHCGQICDPRVTADFWQAWKDFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMSAQMVNVSGSAGTVADLAPGVKDGMRMLEAKAAEVAQMES
RLVIPKGGNILFVRGETQGGDREGARVANPDEIDIDEEEEEGSGSEDSGKEEEAIPHIQK
QTVPSEVFGSLKKNDDDDDD
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgccagaaatagcccggaaagatcttcacattgttttcagtgaagaagatcta
ccatacgaggaggatatcttacgtaatccattttcagtcaagcactggctccggtatatc
gatcacaaaaaaagcgctccaaagaatgccatcaatatcatctatgaaagagccctgaaa
gaattgccaggaagttacaaactctggtacaactacctaaaattaaggagacgtcagact
aagggtcgttgtgttattgatccaatttttgaggatgttaataatgcatttgagcgagct
ctggtgttcatgcacaagatgccaagaatatggatggactactgccagtttttgatggat
caaaatcttatcacccgcactcgccagtcttttgatcgtgccttgcgtgcactgcctgtt
acccaacaccaccgcatttggcccatttaccttacatttgtgaaaaagcatgatattcca
gaaactgctgtgagggtgttcaggagatatttgaagttgtgcccagaagacactgaagat
tatattgagtatttgtcagacattaatcggctagatgaagcagctctcaagttggctttc
attgttaatcatgatgattttgtgtccaaacatggtaaatccaaccatcagttatggaat
gagttgtgtgaactgatttctaaaaatccagatcaagtgaggtcattaaatgttgatgca
atcatccggggtggacttaggcgctacacagatcaattgggtcatttatggaactcattg
gctgactactatgtccgcagtggtctttttgaaagggccagggacatctatgaagaagct
attcaaacagtcaagacagttagagacttcacccaggtgtttgatgcttatgcccagttt
gaagaacttagcctgagcaaacgcatggagcaggctgcaagcaacccaaacccaactgaa
gaagacgatcttgacttggaactccgccttgctcggtttgagcatctcatggagcgacgc
ccacttctgttgaactctgtattgctacgtcaaaacccacataatgtccatgaatggcac
aagagagtaaagctcaatgaaggccaaccacatcagattattgccacatacactgaagca
gtgcaaactgttgatccaaaacttgctgttggaaagttgaacactctatgggtctcattt
gccaaattttacgaggagaacaaccagcttgatgacgctcgtgttgtttttgaaaaggct
acacaagttgcctatgttaaagtggaagatttggcagcagtgtggtgtgagtgggcagaa
atggaaattagacatgagaagccagaaactgctttgaaactcatgcacaaagccacagta
atgcccaatcacaaagctgcttaccatgatgaaactgaaactgttcaaaataggctgtac
aagtccttgaagttgtggtctttgtatgcagatttagaagaaagctttggctcattcaaa
tcctgcaaatctgtgtatgacagaataatagacctaaaaatagcaacaccacaaattatt
atcaattatggtctgttcctagaggaacaaaactactttgaagaggctttcaaggcatat
gagaaaggcattgctctgttcagatggcctaatgtgtatgatatttggaatacttactta
acaaaattcttaagacgttatggtggcaccaaattagagagagccagagatctctttgaa
caatgtttagaaaaatgtccacccaaatttgccaaagctctatatcttctatatgccaaa
cttgaagaagagcatggtttagccagacatgccatggcagtttatgaaagagcaacaggg
gctgttcagccagaggaaatgtttgagatgttcaacatttacattaaaaaagctgccgag
atttatggtgtacctaagacgcgacagatatatgaaaaggctattgaaatgctggatgac
aacaattctcgtgaaatgtgcatgagattcgctgaaatggaaacgaagctgggcgaggtg
gacagagctcgagccatctatgcccactgtggccagatttgtgatccaagggtaactgct
gacttctggcaagcttggaaggactttgaagtgcggcatggaaatgaagacactatgaga
gaaatgctccgtatcaagagaagtgttcaagcaacctataacactcaggtgaacatgatg
tcagcacagatggtgaatgtttctggatcagctggcactgttgctgatctggctcctggt
gtgaaagacggcatgcgtatgcttgaagcaaaggcagcagaagttgcacagatggagtcg
cggctggtgatccccaagggtggcaacattctgtttgttcgtggtgaaactcaaggagga
gacagagagggagccagagttgccaatccagatgaaattgacattgatgaagaggaagag
gaaggttcaggaagtgaagatagtggaaaagaggaagaagccattccacacatacagaag
caaacagttccatcagaagtgttcggaagtttaaagaaaaatgatgatgacgatgatgat
tag
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