Thrips palmi (melon thrips): 117640813
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Entry
117640813 CDS
T08251
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117640813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpal03021
]
117640813
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117640813
Transcription machinery [BR:
tpal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117640813
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117640813
U7-dependent histone pre-mRNA processing factors
117640813
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
DUF4743
Adaptin_N
GCP5-Mod21_N
DUF1648
Motif
Other DBs
NCBI-GeneID:
117640813
NCBI-ProteinID:
XP_034233611
UniProt:
A0A6P8YBJ1
LinkDB
All DBs
Position
Unknown
AA seq
1149 aa
AA seq
DB search
MGENEKPFNKIVEWLNEATSSTDPKLKTENIHKIQEIILNQNPHLLDSFLDDVIAFQSDR
TMEVRRAVVGFIEESCKKDPAILPRVMDSLDLLLRDSAPQVQKRVVQAASQVYRGALMYI
ARTQPVPSQMEKAWSSLCTLKSEIVKLIDNDNDGIRTQSVKFLEGVVLLQTYPEADSMVR
ENDFNLEDIPLTLKIVRRRRLEEEASMIFNLLVKFHGEAHVSSVNLMTCMGSLTLIARMR
PQFMGKVITCLENLNKNLPPTLSKSQVNSVRKHLKLQLTNMLKQPCALEYHAEILKLLTD
LGCTPQEISKIMPKMDDKTRRSHKRAVVESAPSVHKRPRLEALYRPENVIEQPKRAHVTK
PPAEPSSDVTEKFVLERLSPEVAAQLVLAFIPQIPDSMPSHFSSNFAPVVGAGSQAQIQH
IAKMLLSQSSGSGRQMPRKSGRVLTELEEDDTEDANPPPPPTAIAPVAAPAVVSEPVMPP
PPPPVEELMDHDGDDLEGPILHQRESSEQLLAQREKLKELTPMTPLTRPLKQKARALKLA
EITRPLSPEMKTKMCLSAVKRILNAEKIAMFGGVNSIRNKIIVTLASTYNADVRRDILKF
VLEDLQNRLDLELAISWLYEEYSMMQSFTKKPVFTTDEDSASKRYVKLFCALAEHLAEKP
EREPLLKRLYLEAPCITDDATDILKALSCDETRCSIGLQLLQSLVIRRPPKQLTYLNALL
EHTAHDSVEVRSNAMKCVLSLYDDRSDLRSIIEEYAIMYLGFLQLPAPPDVLFGAERGRP
ARADSWAEGPTKACLFLYLELLPHEHRLIHELTRVYVQTVADVKRIILRLLDTPVRGMGM
DSPDLLKLVEDCPKGAETLVTRVIQILTDKTPPSAELVKRVRELYQSRVSDVRFLIPVLN
GLTKREVIDSLPRLIKLNPIVVKEVFNRLLGTHSDSLSHNSPLTPAELLVALHVIDPKKC
ELKTVIKATTLCFSERQAYTQEVLAIVMKQLMEMNPLPTLLMRTVIQSLAAYPNLSGFVM
NILQRLILKQVWTQRKVWEGFIKCCQRTKPQSFQVLLQLPAPQLQEVLEACPEMRQPLLQ
HVQSFTENQRSHVPQSVMDVLTGTRHVVQEEYDAQTVEPMSPDGLTIDVREDNIAENAVG
SEPLPPGMD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgggggaaaatgagaagccgtttaacaagattgtggagtggctgaatgaagccacctct
tctacggaccctaaattaaagactgaaaacattcataaaattcaagaaatcattctcaat
cagaacccacatcttttggattcattccttgacgatgtcattgcttttcaatcagatcgc
accatggaagtacgacgtgcagttgtggggtttattgaagagtcatgcaagaaggatcca
gctattttgccaagggttatggatagtcttgatctcttactccgagactcagcaccccag
gtacagaagcgagttgttcaagctgcatctcaagtttaccggggtgcgcttatgtacata
gctcgtactcaaccagtgccttcacaaatggaaaaggcatggagctccttgtgcaccttg
aaatcagagattgtcaaattaattgacaatgataatgatggcatccgaactcagtctgtt
aagttcttggagggagttgtactgctccaaacatatcctgaagcagatagtatggtaaga
gaaaatgattttaaccttgaagacattccactaactttgaagatagtgcggagacgcaga
ttagaagaagaagccagcatgatatttaatctcctggtgaagtttcatggggaagctcat
gttagcagtgtcaacctaatgacttgcatgggatcacttactctgatagctcgaatgaga
cctcaatttatgggaaaagtaatcacctgcctagaaaacttaaacaaaaacttaccacct
actctctccaagtcacaagtaaattctgtaagaaaacacttgaaactgcagctaacaaat
atgctgaaacaaccatgtgctctggaatatcatgcagaaattttgaaactcttaacagat
cttggttgtactcctcaagagatatctaaaataatgccaaaaatggatgataagacacgg
cgtagtcacaaacgtgctgttgtcgaaagtgcccctagtgtacacaagagaccaagatta
gaggctctttaccgcccagaaaatgtgattgaacagccaaaaagagctcatgtcactaaa
ccacctgctgagccatcaagtgatgttactgagaaatttgtcttggagcggctctcacct
gaggttgcagcacagcttgtcctggcattcatacctcaaattccagattccatgccatcg
cacttctcatctaattttgccccagttgttggcgcaggatctcaagcccaaatccaacat
atcgccaaaatgctactttctcaatcctctggatcaggaaggcaaatgccacgcaaatcg
ggcagggtgttaacagagttagaggaggatgataccgaggacgctaacccgcctcctcca
cccacagccattgctcctgtggctgctccagcagtcgtatcagagccggtaatgcctccc
cctccaccacctgtggaggaactcatggaccatgatggggatgatttagaaggacccatt
cttcaccagcgggaatcatctgagcagcttctagctcaacgagaaaagctgaaggaactt
acaccaatgacacccctgacaagaccattgaaacagaaggctcgagctttaaaacttgca
gaaataacgagaccccttagtccagaaatgaaaaccaagatgtgcctttctgctgttaaa
cgtatattgaatgctgaaaaaatagccatgtttggtggtgtcaactccatacgcaacaaa
ataattgtcacgctagcctctacttacaatgcagatgttaggagagatatacttaaattt
gtgttggaggatttacaaaaccgattggatttggagttagctatatcatggctttatgag
gaatacagtatgatgcagagtttcactaaaaaaccagtgtttactactgatgaggactct
gcctcaaaaagatatgttaaactcttctgtgcgcttgctgagcatttggcggagaaaccc
gagagagaacccctcctcaaacggttatatttggaggcaccctgtattactgatgatgct
actgacattttgaaggcactaagttgtgatgaaacaagatgttctattggactgcaactt
ttgcaaagccttgttataaggcgtcctccaaaacaactcacttatctgaatgctttactg
gaacacactgcccatgacagtgtagaggttcgatccaatgccatgaagtgtgtcctttca
ctttatgatgatcggtctgatcttcgatcaattatagaagagtatgcaatcatgtacctg
ggctttctccaactaccagcccctccagatgtgttgtttggtgcagagagaggacgcccg
gccagggcagacagctgggctgaagggccaactaaagcctgtttgtttttataccttgag
cttttgcctcacgagcaccgattaattcatgagttgactcgggtatatgttcagactgta
gcagatgtaaaacgcattatcttacggttgctggacactcctgttagaggcatgggcatg
gactccccagacttgctgaaactagtggaagattgtcctaaaggggctgagaccttagtc
acgagagtcattcaaatcctaacagataagacccctcctagtgctgaacttgtcaagaga
gtcagggaactgtatcagtcaagggtatcagatgttcggttcttgattcctgtgttgaat
ggtttgactaaaagggaagttattgactccctccctagacttatcaaactgaatcctatt
gttgtcaaagaagtcttcaacaggttgctaggaacacattcagattccctaagtcataat
tcaccattaacaccagcagagctacttgtagctttgcatgttattgaccccaaaaagtgt
gaactaaagactgttattaaggccactactttgtgcttctctgaaaggcaggcttatact
caagaagtattggccatagtaatgaagcaattgatggaaatgaatcccttaccaactctc
ctgatgcgtactgttattcagtctctggctgcatatcccaatctcagtggatttgtcatg
aatatccttcagaggctgattttaaagcaagtttggacccagcgcaaggtgtgggagggt
tttattaaatgctgtcaacgtacaaagcctcagagcttccaagtgcttctgcaattgcct
gcaccacaactacaagaagttttagaggcttgtccagaaatgagacagccactcctgcaa
cacgttcaatcctttactgagaatcagcggtctcatgtcccacagtcagtaatggacgtt
ctgactggcacaagacatgtagttcaagaggaatatgatgcacaaacagtggagccgatg
tctcctgatggactcacaattgatgttcgagaagataatattgcagagaatgcagtagga
tctgaaccacttccaccaggaatggattga
DBGET
integrated database retrieval system
