Thrips palmi (melon thrips): 117640836
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Entry
117640836 CDS
T08251
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117640836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpal03400
]
117640836
DNA repair and recombination proteins [BR:
tpal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117640836
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
117640836
NCBI-ProteinID:
XP_034233656
UniProt:
A0A6P8YBM3
LinkDB
All DBs
Position
Unknown
AA seq
1292 aa
AA seq
DB search
MSAQKNTLFKYFPKSPAASASPGAKGASPAAGTPKTSRLADSPSKTPKRALDSAARAGAQ
DSPKSTKSEFSVSDLVWAKLDSYPWWPSLVCNDPDSDKYQRGGSIHVQFFDNPPTRSWVK
LKMVEKYGGGSGKPSPVTHVKEWQKACEEADKALKMSISERQSLIVNFSELDEDKENATE
EDTSMSTTDGNDSKKGLAFQLDSEDSGDEFKPKDEEMESASGSEESEDDNASEEETSDPE
EPDTPSPVKSKKRKRPSTSSHNGNAAKKPVGAMGPPQTPSVKKKSLAAFSASKNSPARSV
MESSEANSNSSAGEGASNSWAHLKYEFLKPEKIRDANKHRPDHPDYNPRTLSVPEDFKKN
LTPAMRQWWEMKSKHYDCVLFFKVGKFYELYHMDAVIGCTELELSYMKGDFAHSGFPEKA
YGRFSASLIDKGYKVARVEQTETPEMMNERVKHLSRPTKFDKVVKREICAVTSRGTRVFS
AQDGEPVDTGSANYLLAICEEDIDSQVSYGVCFIDTSIGTFHLGQFTDDRHCSRLLMLLA
HHPPVHVLYERNNLSERTQQLLNSQLTAVLKETLAPELEFWSASKTLTKLAEGNYFNEEG
QSHEWPEALKMFISDVDSLGLSPAEEYQLAVRSLGAITWYLSCCHLDQQLLSMQRFENYL
PVDSSKGAKLPGLSGRHMILDGVTLKNLDVLKNKAGGLEGTLLNSLDQCCTPFGRRLLHQ
WICAPLTYTSGILSRQVAISELLKNSHIMEDARGLLAQLPDLERLLSKIHAQGNAVRSKT
HPDSRAIFYEDEIYSKKKIMDFIGTLEGFKKAHKIADLFEDGKDNLKSDMLLQVTCTQAV
VPNGTFPDLEEPLRFFENAFDHDEAQKEGRIIPSTGVDPDYDSAVSDYDNVKKELDAYLK
AQCSYFGCKVVYFGSDKNRFQLEVPEHAAKKAGNKYELKSQKKGFKRFWTPETKDLLARM
MQAEEAKTSVLKDLNRRIFAQFSSRFEIWNTAVKNLAVLDVLLSLAEYARKEEGEICVPV
IAEPSKTEKPFVCLKDGRHPCLSGETLDSYVPNDTVIGADGIASVVLVTGPNMGGKSTLM
RQAGLLLIMAHMGCHIPARECEFSPVDRIFTRLGANDDIMAGESTFFVELSETSAILHHA
TKHSLVLVDELGRGTSTYDGTAIAAAVVKELASLSARTLFSTHYHTLVDEFKNSDQVTLG
HMACMVEDDNEEGGGEETVTFLYKFSAGACPKSYGFNAARLAGVPAHITRVGRTKAAQLE
KECERRRIFRALCGLSGKSLPQSEIKSLLSVV
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcccagaaaaacaccttgttcaagtactttcccaaatccccggcagcatcggcg
tctcccggagcaaagggtgccagcccggccgcgggcactccgaaaacatcgagactagcg
gactcgccctccaagacgcccaagcgggccctggacagcgcggcgcgtgcaggcgctcag
gacagccccaagagcaccaagtctgaattttcagtcagcgatcttgtgtgggccaagctt
gattcatacccttggtggccaagtcttgtctgcaatgatcctgactccgataaatatcaa
cgaggtggaagtattcacgtgcaattttttgataatcctcctacaagatcctgggtgaaa
ttgaaaatggtggagaaatacggtggcggctctgggaaaccatcgcccgttacacatgtt
aaagagtggcagaaggcttgtgaagaagctgacaaggctcttaagatgagtatcagtgaa
aggcagtcactgattgtaaatttctcagaacttgatgaagataaagaaaatgctactgag
gaagacacttcaatgagtacaactgatggaaatgactcaaagaaaggactagcctttcag
ctggacagtgaagattctggagatgagttcaagccaaaggatgaagaaatggaaagtgcg
tctgggtcagaagaatcagaggatgataatgcatctgaagaggagacatctgaccctgag
gaaccagatactccatccccagtcaaatctaaaaaacgcaaaagaccttcgacatcatct
cataatggcaatgcagccaaaaagccagttggtgctatgggtcctccacaaacgccttca
gtgaaaaaaaaatcactggctgcttttagtgcatcaaagaatagtcctgccagatctgtc
atggaatctagtgaggcaaatagtaattcttcagctggagaaggagcaagtaactcatgg
gctcatcttaagtatgagtttttaaagcctgagaagattcgtgatgccaacaagcaccgt
cctgatcatcctgattataacccacgaaccctatctgtccctgaagacttcaagaaaaat
ctgacaccagccatgcgtcaatggtgggaaatgaagtcgaagcattatgactgtgttttg
ttctttaaagttggcaaattttatgaactgtaccacatggatgctgttattgggtgcact
gagctggaattatcttacatgaaaggagactttgctcactctggctttcctgaaaaggct
tatggacggttttctgcatcccttattgacaaagggtacaaagtagcacgagttgaacag
acagaaacacctgagatgatgaatgagcgtgtcaaacacttgtctagaccaacaaagttc
gacaaagttgtgaagcgggagatatgtgcagtaacttcccgtggaacacgggttttcagt
gctcaggatggcgaaccagttgatactggcagtgctaattatcttcttgcaatttgtgaa
gaggacatagattctcaagtttcctatggagtctgtttcattgacacttctatcggaacg
ttccatttgggtcaattcactgatgaccgacactgttctcgcttgttaatgttgcttgcc
catcatcctcctgtacatgtgttgtatgaacgtaataatctttctgaacgaactcagcaa
ttgctaaacagtcaattgactgccgttttaaaggaaacacttgctcctgaacttgaattt
tggtctgcttccaaaactttaactaaattagctgagggaaattactttaatgaagagggg
cagtctcatgagtggccggaggctcttaagatgtttattagtgatgttgattctttgggg
ttatcacctgctgaagaatatcaacttgctgtcaggtccctaggggctatcacttggtac
ctttcctgttgtcatcttgatcagcaacttctgagcatgcaacgctttgagaactacctt
cctgttgattcatctaaaggtgctaaactccctggactcagtggccgccatatgattttg
gatggagtgacattgaaaaaccttgatgtattaaaaaataaagctggtggcctagagggg
acattactgaattctctggatcaatgttgcacaccttttggaagacgcttgcttcatcag
tggatctgtgctcctctcacttataccagtggcattctttcaagacaagttgctatatca
gaacttctcaagaacagtcacataatggaggatgccagaggattgttggcacagttacca
gaccttgaaagattgctgagcaaaatccacgcacaaggaaatgctgtcagaagcaaaacc
catcctgatagtcgagctatcttttatgaagacgagatttactcaaagaaaaagatcatg
gattttatcggtactttagagggattcaagaaagcccataagattgctgacttgtttgaa
gatggaaaggataatttaaaatcagacatgctgctacaagtcacctgcactcaagcagtt
gttccaaatggcacattccctgatctagaagaacctcttcgcttttttgagaatgctttt
gatcatgatgaagctcagaaggaaggtcgcatcattccaagtactggggtggacccagac
tatgatagtgcagtttctgattatgataatgttaaaaaggaattggatgcttatcttaag
gcccagtgctcttactttgggtgcaaggttgtttattttggttcagacaagaatcgtttt
cagctggaggtaccagagcatgctgctaaaaaagctggcaacaaatatgagcttaaatct
cagaagaaagggttcaagcgattttggacacctgagacaaaggatttacttgctcgaatg
atgcaagcagaagaagccaagacatctgttctaaaggatttaaacagaagaatatttgcc
caattcagttctaggttcgagatttggaacactgctgttaaaaacttggcagttttagat
gtgctgctttcccttgctgagtatgcacggaaagaagaaggagagatttgtgtgcctgta
atagcagagccctcaaagactgagaagccatttgtttgtttgaaagatgggagacatcct
tgtttgtctggagaaactctcgacagttatgttcctaatgatactgtgattggagccgat
ggaattgcaagtgttgttttagtaacaggccccaacatgggaggaaagtctacactgatg
cgacaagcaggtcttctccttattatggctcatatgggctgtcacattcctgctcgggaa
tgtgagttttcacctgttgatcgcatatttactcgcctgggagccaatgatgacattatg
gctggtgaaagtacattctttgtggagctcagtgaaacatctgccattcttcatcatgcc
accaaacactcgcttgttcttgttgatgagttgggacgtggtacatctacatatgatgga
actgctattgctgctgctgttgtgaaagaattggcatctctcagtgcaagaaccctcttc
tcaactcactaccacactttggttgatgaattcaaaaattctgaccaggttactcttggg
cacatggcttgtatggttgaggatgacaatgaagaagggggtggagaggagactgtgaca
ttcctgtacaaattctctgctggagcttgtcccaaatcatacgggttcaatgcagctcgt
ttggctggtgtgcctgcgcacatcacgcgcgtgggcaggaccaaagcggctcagctcgaa
aaggaatgtgagagacgaagaattttcagggcgctgtgtggcctatcaggcaaatcatta
cctcaatcagaaattaagtctttactctcagttgtttag
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integrated database retrieval system
