Thrips palmi (melon thrips): 117641517
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Entry
117641517 CDS
T08251
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03022
Basal transcription factors
tpal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117641517
09124 Replication and repair
03420 Nucleotide excision repair
117641517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpal03021
]
117641517
03400 DNA repair and recombination proteins [BR:
tpal03400
]
117641517
Enzymes [BR:
tpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117641517
Transcription machinery [BR:
tpal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117641517
DNA repair and recombination proteins [BR:
tpal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117641517
BRITE hierarchy
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
nSTAND3
SNF2-rel_dom
IPK
Motif
Other DBs
NCBI-GeneID:
117641517
NCBI-ProteinID:
XP_034234805
UniProt:
A0A6P8YD68
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MKLSVDGLLVYFPYDYIYPEQYAYMMELKRGLDAKGHCLLEMPSGTGKTITLISLIVAYM
IENPFSVVKLIYCSRTVPEIEKVLEELKRLLAYIEREREVPNTMTGVVLSSRKNLCIHPQ
VSKERDGKVVDGRCHTLTASYVRERHKSDDSVPVCSFFESYDIEGREGTVPPGVYNLDDL
KAYGQKMGWCPYFIARQTILHAQIVVYSYHYLLDPKIAEVVSKELSRNAVVVFDEAHNID
NVCIDSMSVRITRRIIDKSVQNLQFLEASVKEMRESDEGSLQNEYERLVEGLRQANEQRE
TDEILANPVMPNEILREAVPGNIRTAEHFVSFLKRFVEYLKTRLRVQHVVQESSAGFLKD
CLEKVCIQRKPLRFCAERLSSLLRTIEVSDLTDFSPLTLITHLATLVSTYTKGFSIIVEP
FDDKNPTVSNPILYFSCLDSSIAIKPVFERFQSVIITSGTLSPLDMYPKILDFHPVIMSS
FTMTLARPCLLPMIVSKGNDQVAISSRYETREDVAVVRNYGQLLVEVASVVPDGVVCFFT
SYLYLESVVAAWYDQGVISNLQRHKLLFIETQDAAETSLALLNYIKACDTGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILRARLEYLRDQFQIRENDFLTFDAMRHA
AQCIGRVLRGKTDYGIMIFADKRFSRSDKRSKIPKWIQEYLSDNLCNLSTEECIQMCKRF
LRKMAQPFTQEDQMGVSLLTLEQLENEELMKKTEQKAHAKLS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgagtgtggatgggctcttagtgtattttccatatgattacatatacccagaa
caatatgcttacatgatggaactgaagaggggacttgacgcaaagggccactgcctgttg
gagatgccctctggaacggggaaaacaattaccctcatttcactcatcgttgcttatatg
attgaaaaccctttctcagtggtaaagcttatttactgctccagaacagtacctgagatt
gagaaagtcttggaagagttaaaaagacttcttgcttatatcgaaagggaaagagaggtt
ccaaacactatgactggagtagtgcttagctcacggaaaaatctttgcattcatcctcaa
gttagcaaagaaagagatggcaaagttgtagacggtcgatgtcacaccctgacagcttcc
tatgtccgagagcggcataagtctgatgactcggttcctgtctgctcgttcttcgaaagc
tacgatattgaaggtcgagaaggaactgttcctcctggtgtttacaatctagatgatctg
aaagcatatggccaaaaaatgggatggtgtccttacttcatagcaaggcagacgatcctt
catgctcaaattgtggtgtacagttaccactatcttcttgatcccaagattgctgaagtt
gtatccaaagagctttcaaggaatgctgttgttgtttttgatgaagctcacaacatagat
aatgtgtgcattgattctatgagtgtacgaatcacaaggagaattattgacaaaagtgtt
caaaaccttcaatttcttgaagcatcagttaaggagatgcgtgaatcagatgaaggtagc
ctccaaaatgaatacgagcgtctggtggaaggattgcgccaagctaatgagcaacgagag
acagacgaaatccttgcaaaccctgttatgccgaatgaaattttgagagaggctgtgcct
ggaaacattagaactgcagaacactttgtcagcttccttaaacgttttgtagaatatctg
aaaacaaggttgcgtgtgcaacatgtagtccaggaatcatctgctggctttcttaaggat
tgtcttgaaaaagtttgcattcaaaggaagccactgagattttgtgctgaacggctttca
tctttactaaggacaattgaagtttccgatttaacagacttctctcctctaactttaatc
acacatctagcaactttagtatctacatataccaagggtttttcaattattgtggaacca
tttgatgataagaaccctacagtctcaaacccaattctttacttcagttgtttagattcc
agtattgctataaagccagtctttgaacgttttcaaagcgttataatcacatctggtacc
ttgtctcctcttgatatgtaccccaaaatcctagattttcatcctgtcattatgagctct
tttactatgactttagcaagaccttgtctcctgccaatgattgtgtctaaaggtaatgat
caggtagcaatatcgtcacgttatgagacaagagaagatgttgcagttgtgaggaattat
gggcagttgcttgttgaggtggcctctgtagtgcctgatggagttgtgtgcttttttacc
tcttatctttatttggagtctgttgtggctgcatggtatgatcaaggagttatatcaaat
ctccaacgacacaaattactcttcattgaaacacaggacgcagctgaaacaagtttagct
cttctaaactatataaaggcatgtgatactggcaggggagctgttttgctctctgtggct
cggggaaaagtatcagagggagtggattttgatcaccatttgggccgagctgtgttgatg
tttggaatcccttatgtatacactcaatccagaatcttacgtgctagattggaatattta
cgagatcaattccaaattagagaaaatgattttttgacatttgatgcaatgagacatgct
gcccagtgtataggtcgtgtcctcagaggaaaaactgattatggaattatgattttcgcc
gacaagagattctctcgctctgataagaggagtaaaataccaaagtggatacaggagtat
ctgtcagacaacctttgcaatctgtcaactgaagaatgcattcagatgtgcaaaaggttt
ttacggaaaatggctcaacccttcacgcaggaggatcaaatgggagtgtcactcttaaca
ttggagcagcttgaaaatgaagaattgatgaagaaaactgaacagaaagcccatgccaag
ctgtcttga
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