KEGG   Thrips palmi (melon thrips): 117641690
Entry
117641690         CDS       T08251                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tpal  Thrips palmi (melon thrips)
Pathway
tpal03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117641690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tpal03041]
    117641690
Spliceosome [BR:tpal03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    117641690
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st PRP4 NBCH_WD40 Beta-prop_EML Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_IFT140_1st WD40_like Beta-prop_Nup120_160 WD_LRWD1 WD40_RFWD3 Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_ACSF4 Beta-prop_SPT8 Nbas_N
Other DBs
NCBI-GeneID: 117641690
NCBI-ProteinID: XP_034235100
UniProt: A0A6P8YF64
LinkDB
Position
Unknown
AA seq 515 aa
MSDDEEAPYTKKTRTIHYGSLEEQEKSRQQSVAEKAREESDDDDDDSDNDGQPMETGNIH
THDEYFDLEEEMSKDKQALLEEFERRKKARQINVSTDDDEVKKNLRQLGEPICLFGEGPA
ERRSRLKDWLSRLGEDAIKKRQEEEEERIQQEKDQESTWYHEGPESLKVSRLWLAQYSLA
RARERLEAAREELRLPEATRTARRQEVHKRLQAVSIFASQIGDTRPISYCQFSPNSQMLA
TASWSGICKVWSIPDCKQIHTLRGHQCNVGAVIFHPNASTDSQAVCTLASCAADGSVKLW
TLESEEPLADVEGHAPHRVSRIGFHPSGRFLGTCCFDNSWRLWDLEQCSEVLHQEGHTKP
VYCISFQRDGSVAATGGLDAFARVWDLRTGRCIMFMEGHLKSIHGIDFSPNGYHIATGSE
DNTCRIWDLRKRQCVYTIPAHTNLISEVKYQRESGTFLLTASYDNTAKVWSNKTFQPIKT
LSGHDGKVMCADVSPDTQYIATSSYDRTFKLWAPE
NT seq 1548 nt   +upstreamnt  +downstreamnt
atgtcagacgacgaagaagccccttatacaaagaagactagaaccattcattatggttca
cttgaggagcaagaaaagtctaggcagcagtctgtggccgaaaaagcaagagaagaaagt
gatgacgatgatgatgattcagataatgacggccagccaatggagactggaaacattcac
actcatgatgagtattttgatcttgaagaggaaatgtccaaagacaagcaggctcttttg
gaagaatttgagaggagaaaaaaagcgagacaaatcaatgtttctactgatgatgacgaa
gtgaagaaaaatttacggcagttgggggagcctatctgtttatttggggaaggtcctgca
gaacgacggtcacgattaaaagactggttgtcaaggcttggagaagatgctatcaagaaa
aggcaggaggaggaggaggaaagaatccagcaagaaaaagatcaagaatctacatggtat
cacgaaggtcctgaatctctgaaagtttctaggctgtggcttgcacaatattcgttggct
cgggctcgggagcgattggaagcagcccgagaggagctgaggctaccagaggccacaaga
actgctcgccgtcaggaagttcacaaaagacttcaggctgtttctatttttgcttctcaa
attggagatactagacctatttcttactgtcaattcagtccgaattcacaaatgcttgct
actgcatcttggagtggaatttgcaaagtatggtctattccagattgcaaacagatacat
actctaagaggtcatcaatgtaacgttggtgcagttatttttcatccaaatgcttcaaca
gattctcaagcagtttgtacattagcttcctgtgcagcagatggctctgtaaagttgtgg
actcttgagagtgaggaacctttagctgatgttgagggccatgcaccacatagagtttct
cgcattggatttcacccatcagggcgctttttaggaacatgttgttttgacaactcatgg
agattgtgggacttggaacagtgctcagaagttttacatcaagagggtcataccaagcct
gtgtattgcatctcctttcaaagagatggatctgttgcagcaactggaggcttagatgct
tttgccagagtatgggacttgcgcacaggacgttgcataatgtttatggaggggcatcta
aagtccattcatggaattgacttctccccaaatgggtatcatattgctacaggaagtgag
gacaacacatgtagaatttgggatctccgtaaacgccagtgtgtttatactattccggcc
catactaatcttatttcagaagtcaaataccagagagagagtggaacatttttactgact
gcatcttatgacaatactgcaaaggtgtggtctaacaagacattccagcccatcaagact
ctctctggtcatgacggtaaagtcatgtgtgcggatgtttccccagatacccagtacatc
gctacaagctcttacgacaggacctttaaattgtgggcaccagaatga

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