Thrips palmi (melon thrips): 117644149
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Entry
117644149 CDS
T08251
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
tpal
Thrips palmi (melon thrips)
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpal04147
]
117644149
00535 Proteoglycans [BR:
tpal00535
]
117644149
00536 Glycosaminoglycan binding proteins [BR:
tpal00536
]
117644149
Exosome [BR:
tpal04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117644149
Proteoglycans [BR:
tpal00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117644149
Glycosaminoglycan binding proteins [BR:
tpal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117644149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
117644149
NCBI-ProteinID:
XP_034239305
UniProt:
A0A6P8YPX3
LinkDB
All DBs
Position
Unknown
AA seq
1230 aa
AA seq
DB search
MQLLRLGAALLLAAVAVHSRHSGGGVRGEEEFLGVELGGSGRLPRDLDRKANGNGSDVGG
DGGGGSGDGPTDKYSDWGNDILSAIEIPFVDTKTQYFDYAPDGFPAFGLLPGSDVKKPFR
VHMPERLYPEFSITAKIRHTSREGGFLFAVVNPLDTVVQLGVQLAPASAEAPNHTNVTLL
YTDVSIHHSSQTIASFVVPSFVGRWGRLALAVTESSVTLYYNCEAVDTVNVERVPRELVF
DSASTLYVGQAGPIIKGFYNGSLQELKLYGLPGVAEVSCDNHHQFSGSGEPDETTPLNDF
EASGGGDDALLTGNAILLTDNLVDQETGEGKEHGGMPPFPPPPPGPDDFGGIRGLKGDKG
DRGLRGPPGESIRGPPGPPGPPGPPGAFYGSGDAFPTDEGRGYRPNQMFGAGVGPQGPQG
PPGTCSCNLTNVLGSMNLDLIPGPPGQAGIDGAPGIPGVSGLPGPPGERGAPGPRGDKGE
RGDIGATGPEGIQGQKGDPGRDGTPGIPGAPGPPGPPGTSEPAAYDPNWNSRSVLKDSVL
GGGYGANMGRPGSPGPKGETGAAGHPGAKGERGVQGSKGERGEAGARGAKGDRGHQGPHG
PQGFKGEPGSPGVDGQPGVPGDNGRPGSKGDKGDPGTVGAPGPPGPPGVAVFNPEEAKFL
GGGPMVLGETSSLPGPQGEKGDQGIKGEKGDSGERGPAGIPGLNGVQGPAGEKGESGTPG
PVGPPGLRGDRGERGERGLPGPVVTVDGEVNVVKGDKGDSGKRGRRGKPGLPGPPGKDGT
SGEMGLPGWQGLPGRPGRAGMPGLGFEGPKGQKGEPGLIPHPHRPRVRGEPGLPGPMGPP
GPPGASGPPGPPGPPSEVKYMPVPGPPGPPGPPGPPASSEGRGSVFGGEQTHSRPGSRGG
IEELNKAMKDIRNRDSGYSSPTSTVYEKSTRIVPGAVTYQNKEAMTSRSAETAVGTLAYI
IDEEALLVRVNKGWQYVALGSVLDVTTPPPPTTYHPHVRPPPLESSNLVNTYYMAADQPA
LRMAALNEPYSGDMHGVRGADHACYRQAQRANMRGTFRAFISSRVQDLDSIVRPADRNLP
VINTRGDVLFKSWKELFAGKGGFLPQQHKIYSFNGRDILNDFAWPEKVVWHGAHMLGERA
MDAYCDSWHSDSSDKVGLASSLLRGKLLAQERFTCNHRFAVLCIEAVNPNLYRRRRRSIE
LTEESEEDDDFLDEDEYQDFLKTLMDDEEQ
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcttgaggttgggcgcggcgctgctgctcgccgcggtggcggtccactcgaga
cacagcggtggcggagtccgaggcgaggaggaatttttgggcgtggagctgggcggctcg
gggcgcttgccgcgggacctagatcggaaagcgaatgggaatggctcggacgtgggtggc
gacggtggcggcgggagcggcgacggccccacggacaagtactccgactggggcaacgac
atcctgtccgccatcgagatccccttcgtggacaccaagacgcagtacttcgactacgcg
cccgacggcttcccggccttcgggctgctgccgggctcggacgtcaagaagcccttccgg
gtgcacatgccggagcggctctacccggagttctccatcacggccaagatccggcacacg
agccgcgagggtggcttcctcttcgccgtggtcaaccccctggacaccgtggtgcagctc
ggcgtgcagctggcgcccgccagcgcggaggcgcccaaccacaccaacgtgacgctgctg
tacacggacgtgtccattcaccactcgtcgcagaccatcgcctccttcgtggtgccctcc
ttcgtggggcgctggggccgcctcgcgctcgccgtcaccgagtcctccgtcacgctgtac
tacaactgcgaggccgtggacaccgtcaacgtggagcgcgtccccagggagctggtgttc
gactcggcctccacactgtacgtcggccaggccggccccatcatcaagggcttctacaac
ggctcgctccaggagctcaagctgtacggactgcccggcgtggcggaggtctcctgcgac
aaccaccaccagtttagcgggtcgggcgagccggacgagacgacgcccctgaacgacttc
gaggccagcgggggcggcgacgacgcgctgctcacggggaatgccatcctgctgaccgac
aacctcgtggaccaggagacgggcgaggggaaggagcacggcggcatgcctccgttcccg
ccgccaccgccaggccccgacgacttcggcgggattcgcggcctgaaaggggacaagggt
gaccgtggtctccggggtcctccaggagagtcgatccgaggccccccaggaccgccgggc
ccccccgggccccctggggcgttctacggcagtggggacgccttcccaacggacgaaggg
cgtggctacagaccaaatcagatgtttggagcgggagtaggccctcagggaccgcagggc
cctcccggcacctgttcctgcaacctcaccaacgtcctgggatccatgaacctggacctc
attccaggacctcccggacaagctggcatcgacggcgcacctggaatccctggagtctcg
ggcctgcctggacctcccggagaaagaggagcccctggaccgcgaggggacaagggcgaa
cgcggtgacatcggagcgacggggccggagggcatccagggccagaaaggcgatcccgga
cgcgacggcacacccggcattccgggggctccggggccgcccgggcctccggggaccagc
gagcccgccgcgtatgatcccaactggaactcccgctccgtgctcaaggactcggtgctg
ggcggcggctacggcgccaacatgggccggccgggcagcccgggccccaagggcgagacg
ggcgcggcgggccaccccggcgcgaagggcgagcgaggcgtgcagggctccaagggcgag
cgcggcgaggcgggcgccaggggcgccaagggcgaccgcggccaccagggcccgcacggg
ccgcagggcttcaagggcgagccagggtccccgggcgtcgacggccagcccggagtcccg
ggtgacaacggccggcccggctccaagggcgacaagggggacccgggcacggtcggagcg
cccggcccgccaggcccgcccggcgtcgccgtgttcaacccggaggaggccaagttcctt
ggcggcggccccatggtgctgggggagacttcgtcgctgcccgggccgcagggcgagaag
ggcgaccagggcatcaagggcgagaagggcgactcgggcgagcgcgggccggcgggcatc
ccgggcctgaacggcgtgcagggcccggccggcgagaagggcgagtcaggcactcctggg
ccggtggggccgccggggctgcggggcgaccggggcgagaggggcgagcgcggcctgccc
gggcccgtcgtcaccgtggacggcgaggtgaacgtggtcaagggcgacaagggcgactcc
ggcaagagggggcgccgcggcaagccaggcctgcccggccctcctggaaaagatggcacc
tcgggagagatgggccttcccggctggcagggactgccgggccgcccgggacgtgcggga
atgccgggtctcggattcgaaggcccaaaagggcagaagggagaacctgggttaataccc
cacccccaccggcctcgggttcgtggagaaccaggattgcctggaccaatggggcctcct
ggacccccaggtgcaagcggtcctccaggacctccagggcctccttctgaagtcaagtac
atgcctgtgccagggccgcctggcccacctggtcctcccggacctcctgcatcatctgaa
ggtcgtggctccgttttcggaggagagcaaacacattcaaggccgggttctaggggaggc
attgaagagctcaacaaagctatgaaggacattagaaacagagattcaggctacagttca
ccaacttctaccgtatatgaaaagtcaaccagaattgttcctggtgctgtgacttaccaa
aataaggaggccatgacgagtaggtctgcagaaacagcagtaggcactttagcatacatc
attgatgaggaagctttactagtacgggtcaacaaagggtggcagtatgttgcacttgga
tctgtgttggatgtcaccacacccccaccaccaacaacctaccatccacatgtgagacct
cctccattggaatcttcaaatcttgtcaatacttactacatggcagcagaccagcctgct
ttacggatggctgcactgaatgaaccttattctggagacatgcatggagttcgaggtgca
gaccatgcgtgttaccgacaagcccagagagccaacatgcgtggtacattcagagctttt
atttcgtctcgagttcaagatcttgattcgattgttcgccctgctgataggaatcttcca
gtgataaatacaaggggtgacgttctttttaaatcatggaaagaattatttgctgggaag
ggaggattccttccgcagcagcacaaaatttatagtttcaatggaagagacattttgaat
gattttgcctggcctgagaaagttgtatggcatggggctcacatgttgggtgagcgtgca
atggatgcatattgtgattcttggcattcagacagttctgacaaagttggacttgcatca
tcactattaagagggaagcttctagctcaagaacggtttacttgcaatcatcggtttgct
gttctgtgcatagaagctgtaaatccaaatctatacagaagacggcgaagaagtattgaa
ctgacagaagaaagtgaggaagatgatgattttcttgatgaagatgagtatcaagacttt
ttaaaaacactaatggatgatgaagaacagtag
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integrated database retrieval system
