Thrips palmi (melon thrips): 117644937
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Entry
117644937 CDS
T08251
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117644937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117644937
Enzymes [BR:
tpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
117644937
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117644937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
ATP_bind_1
AAA_22
MMR_HSR1
TniB
AAA_16
AAA_24
nSTAND3
AAA_14
Motif
Other DBs
NCBI-GeneID:
117644937
NCBI-ProteinID:
XP_034240619
UniProt:
A0A6P8ZMH6
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MSAPSAEGSTDSVQTFELGPEHELRFEVEGKNKVIMSVRAGMAEVFGTELVKEKEYTFLS
GAKIAVFTWQGATIELRGKAEGCYIAKETPMVMYLNCHAGLEQLRRKAEENSELHGPVLM
VVGPQDVGKSTLCRLLLNYGVRMGRRPIFVDLDVGQSHVSIPGTIGALLVERPAAVEEGF
SQQAPIVYHFGHKSPSGNIKLFNTLVSTLAECIKERMQANRKANVSGVIINTCGWVKQSG
YRSLTHIAQAFEVDVIVVLDQERLYNELVRDMPPFVRVVFLPKSGGVVERNKAARSEARD
SRVKEYFYGLRSPMYPHSFDVRFSDVKIYKIGAPSLPDSCMPLGMKADDNKTKLVQMQPG
MGILNHILAVSFANSLEEEVIQSNVAGFICVTKVDPERQMMTVLSPQPRPLPQTLLLLSE
VQYMDSQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctccttcggctgaaggatctactgactctgtccagacgtttgaattaggacct
gaacatgaactccgtttcgaagttgaaggaaagaataaggtcatcatgtcggttcgtgct
ggaatggcagaagttttcggaactgaactagtcaaagaaaaggaatacacattcctgtct
ggagctaaaatagctgtatttacctggcaaggagcaactatagaactacgaggaaaagcg
gaaggctgttacattgccaaagagacacccatggttatgtacttaaattgccatgctggc
cttgagcagttacgaaggaaagcagaagagaacagtgaacttcatggacctgtcctaatg
gttgttggtccacaagatgttggcaaatctactctttgtcggcttctactgaactatgga
gttcgtatggggcgacgccccatttttgttgatcttgatgttggtcagagccatgtttct
attcctggaactattggggccctgttggttgaaagaccagctgcagttgaagaggggttc
tcacaacaagctcccattgtatatcactttgggcacaaatcacccagcggtaatataaaa
ctcttcaacacacttgtatcaactttagcagaatgtatcaaagaaagaatgcaagcaaat
cggaaagccaatgtttctggagtgatcataaacacttgtggttgggtaaaacaaagtggc
taccggtcactcactcatattgcacaagcatttgaagttgatgttattgttgtattggat
caggaaagactgtataatgaattagtcagagatatgccaccttttgttcgtgttgtcttc
cttccaaagagtggcggggttgttgaaagaaataaagctgcaagatcagaggctcgggat
tcaagagtaaaggagtatttttatgggctacggtctcctatgtatccccattcatttgat
gtccgcttcagtgatgtgaaaatttataaaattggagctccatccttgccagattcttgt
atgccactgggtatgaaagcagatgacaataaaactaaacttgtacagatgcagccaggc
atgggcattctcaatcacattttggcagtaagctttgcaaattcattagaggaagaagta
attcaaagcaatgtagctggattcatttgtgtaactaaagttgatccagaaagacaaatg
atgactgttttatcacctcaaccacgacctcttccccaaactttacttttgttatctgaa
gttcaatatatggacagtcagtag
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