Thrips palmi (melon thrips): 117646898
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Entry
117646898 CDS
T08251
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117646898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpal03021
]
117646898
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117646898
Transcription machinery [BR:
tpal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117646898
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117646898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Pcf11_helical
zf_UBZ
DUF7340
CTK3
Motif
Other DBs
NCBI-GeneID:
117646898
NCBI-ProteinID:
XP_034244100
UniProt:
A0A6P8Z264
LinkDB
All DBs
Position
Unknown
AA seq
1814 aa
AA seq
DB search
MMKQTRRTMMLDKAEAQEAVNNYMSSVAELTVNSKPHINALTFLAEDYLNYAEAIVKAVD
DHLQKVPSNVKLPILYLIDSIIKNVRKDYISLFSRTMVQSFSTVFRQVDEKTRQQMYKLR
LTWKDIYSQEDLYAMDVSVNALDPNWPITAAPPQPPPLKIHINPKFLKPSSAAVPAADVV
PEVIGAGGTSPDIAPVVAAIVPEPDKAAKLREQLLQRKKELLQLQKEKLDLELSQIKKLE
EEKEKKVVTHLKEKIPLQVPVSSKEKPISVTPLRVENVAMIKEEGKKVVKLEAPKKEAAF
PSPDPALPAPSSHPKIAPVSMGLVNLVTSTRAQRDPRLSKLKEETPIEVQKDESTKSQGR
SKDPRLSSKRSRSSDKDLSKGSRAHSRDVSADRSSSRHSSRREDREKRSSESRKSSRKSE
DHSSSRSKTASSRSPGKSSSKRDRRDSNRSPRKSSYSSHRPVSDAGADSPDSDASDAVER
VVSPISPRPGSASVAGSSTWPVNYTKGTHKGRNYRTDKSLQEEPPEAVSSTVSSDTDLRA
PPEKQIRLANSSERLLQSSSSTLSPGVPEQTLPTIACHDVDLRGLLSSPGKKRHSAEPED
GQPPNKKNKAARIESLFGTQDVDLRQNSAMAVEAPSPPPPPIISSPEGQTPRKDDSLGWS
KFKQTLTPSPTVERSPAFPRSSRHDRLGRSSGESELSQNEDTDMRLHMNGLELSSKPDCQ
AILARAHEQVKNGTMSDADFQLVQKQVIRLHESEKIREAQRNDYTRRDAWERRPREKDYR
HGMGSPDHEQFGDIDERYPGPRPSKKPLLPLPSQPPMAPVHPRHMAMSQRMSGPMGGPVY
RPHRGMTGMIGPRPGPRGYYGGPWRYSRGGPPGFKDTASSLPPADNFILERIAQDPMRTI
TIDSIAREIRFYGEDAVAFLSADNPCEISFDPGEASIIINEVAVHCAFHQPAKEINVSGK
IYRVRLGAPTRELYVNDEGFECQFNCPPKEVYLATGEVLSVQLQSEEWPKVHVGNSRRDL
VAGRVTLIIDAEVAVPIFLDAKPQRFDIDGVPHIIKFADALQTILINNRPFNIQFGGSAV
PVIVNCKKHYIRLTELPPDVVPGEVEIVSMSGRTKKPASGMTPPTRANGQWAGSNQTSQI
DNGVRNAAELEPDHDPALPMHEPVLPVRGGLGVLSRGMPKRIPKPRGPRPTREMTDSLKP
ARVEDRQMPADLLQAIQPGLPSLLGLLPNTSGYSCTTSTVSGAYAMRQGVGSGVAPTAGP
APNGTDDAAPTASTAGTESTSSNPSAGIPFLAPDLDISKLFQSLYDTGIMSSISSLVDTK
KEKVKEEEDAKKKIHVVDFKEASTSFKVKQPALIDILYSGIQCSSCGTRFPPEQTEKYSA
HLDWHFRQNRRDKDSARKPQSRKWYYDVSDWIQFEEIDDTVDKAQNWFDSQQSEASKFEE
AEEEEIQSVPSKDFAEGAICDLCHDRFDQYYNEEKEEWHLKDCLVADGLTYHPFCYKDFR
VSLESNEEPQEPAEAAAEAPESAEAPESTEDSGSAEAAPDGTDTVSTAPTEDEPMPAIEI
KKEPEDVEMKTQDSAQEEEAVETEGAVKEEKSTGEEENVKRETASEADPASAVAVDGVDE
KEGGEQVPEVKEEGASPNPTVKHELDDKPADSSAERDPVGNHDEATEANEEPVVKEEVET
TEEPSEASTVDEEAAEPKTLDEPLPPPVNTNVGVVSCSIDGNLDLAQAPAALPSVPNRIK
INISKPIFVKPEETEDESDKASESEDQDEKAKAGSSEPSSEQAIVLKPKLVGRKLTELPA
KVRGNETSGLCSVM
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagcagacgcgaagaacaatgatgctggataaagctgaagctcaggaggcggtg
aacaactacatgtcctctgtagctgaattgaccgtgaacagtaaaccccacattaacgcg
ctcacctttcttgctgaagattatttaaattacgccgaggccattgttaaagcagttgat
gatcatctccaaaaggtacccagcaacgtgaaactacccatcttgtacctcatcgactcc
atcatcaaaaatgtgcgaaaagactacattagcctcttttcccgcaccatggtacagtca
ttcagtacagttttcagacaggttgatgaaaagaccagacaacagatgtataagcttcga
ctgacatggaaggacatctactctcaagaggatctttatgctatggatgttagtgttaac
gcattggatcctaattggccaataacagcagcaccccctcaaccacccccgctcaaaatt
cacatcaaccccaaatttctgaaacctagttctgctgctgtccctgctgcagacgtcgtt
cccgaggtgataggcgctggaggaactagtcctgatattgctcctgtagtggctgcgatt
gtgccagagccagataaagctgccaagttgcgagagcaacttcttcaaagaaagaaagaa
cttctacaactgcaaaaggaaaaacttgaccttgaactttcacaaataaaaaagttagag
gaggaaaaggagaaaaaagttgtcactcacttgaaagaaaagattcctcttcaagtacct
gtttctagtaaagagaaacctatcagtgtgacaccattaagagtggaaaatgtagcaatg
atcaaagaagaaggcaagaaagttgtgaaacttgaggcacctaagaaggaggcagcattt
ccttcaccagacccagcattgccagccccgtctagtcaccctaaaatagctccagttagc
atgggtctggtcaacctcgttacaagtacacgcgctcagagagaccctcgtctttcaaag
ttgaaagaagaaacccctatagaagtacagaaagatgaatcaacaaaatctcaaggaaga
agtaaagatccgaggttaagcagcaagcgttcaaggtcatcagataaggacttatctaag
ggaagcagagcgcattcaagggatgtttcagctgatagaagtagtagtagacattctagt
cgaagagaagatagagaaaagcgttcaagtgaaagtaggaagtcaagtaggaagtctgaa
gaccacagttcttcaagatcaaaaactgcaagtagccgttcacctgggaaaagctcctcc
aaacgtgataggagggacagcaaccgaagtccaagaaagtccagttactccagccacagg
cctgtgtctgacgctggcgcagattctcctgattctgatgcctcagatgctgtagagaga
gtagtgtcccccatctcacctcgtcctggttctgcatccgttgctggtagttctacctgg
cctgtcaactacaccaaaggtacccacaaggggcgcaactatcgcaccgacaagagcctt
caagaggagcctccagaagctgttagttcaactgtaagcagcgacacggacttacgtgca
cctcctgagaagcagatccgcttggcaaattcctctgaaaggttacttcagtcaagctct
tcgaccttatctcctggtgtaccggagcaaactttacccaccatagcttgtcatgatgtt
gacctacgcggcttactctcatcaccagggaagaaacgtcattcagctgaacctgaggat
ggacaaccaccaaacaaaaaaaataaggcagctagaatagaatcgttgtttgggacgcaa
gatgttgaccttcgtcaaaatagtgcaatggctgttgaggctccttcccctccaccacct
cccataatctcctcacctgaaggacaaacaccacgaaaagacgactctttagggtggtcc
aagttcaagcaaacgctgacaccatcaccaacagtggaacgttctcctgcatttcccaga
tcatcgagacatgaccgccttggtcgctcttcaggagagagtgaattaagtcaaaatgag
gatacagacatgcgacttcacatgaacggtcttgaattgtcttcaaaaccagactgccag
gctatattggcaagagcacatgagcaagtgaagaatggaacaatgtctgatgctgacttt
cagctggtgcaaaagcaggtgattcgtttacatgaatctgagaaaattcgggaagcccaa
agaaatgactacactcgccgagatgcatgggaaaggagaccaagagaaaaggattacagg
catggaatgggatcaccagaccatgagcagtttggcgacatcgatgaaaggtatccgggt
ccccgtccaagcaagaagcctctccttccattaccttcccagccacccatggcaccagtg
caccctcgtcacatggcgatgagccagcgcatgtctgggcccatgggagggcctgtctac
cggccccaccgcggtatgactggtatgattggccccaggcccgggcctcgcggctattac
ggcggcccatggcgctattcaaggggaggaccacccggattcaaggacactgccagttcc
cttccacctgctgataacttcatcttggagaggattgctcaggacccgatgagaacaatc
actatagatagtattgcaagagagattcggttttacggtgaagatgctgttgctttctta
agtgctgacaatccatgtgaaatctcttttgatcctggtgaagcttccatcattattaat
gaggttgcagttcattgtgcattccatcaaccagcaaaagagatcaatgtatctggaaaa
atttatagagtccgcttaggagcccctactagagagttgtatgtgaatgatgaaggtttt
gagtgtcaattcaattgtccccccaaagaggtatatcttgcgactggggaggtcctctca
gtgcagttacaatcagaggagtggcccaaggtccatgttggaaattcacgaagagattta
gtggcaggacgtgttacactcatcattgatgccgaagttgctgttcccattttcttggat
gccaaacctcaaaggttcgacattgatggtgtgccccatatcatcaagtttgcagacgcc
ttacagacaattcttatcaacaaccgcccgttcaatattcaatttggtggttccgctgtg
cctgttatagtcaattgcaaaaaacattacattcgtttgactgagttgccgcctgatgtg
gttcctggtgaggtggaaattgtcagcatgagtggtaggaccaagaaacccgcctctgga
atgacaccaccaacgcgagccaatgggcaatgggctggttctaaccaaacatcacaaatc
gataatggcgtgagaaatgcagcagaactggaaccagaccatgatccagctctaccgatg
cacgaacctgttttacctgttcgaggaggcttaggagtgttgagtcgaggaatgccgaag
agaataccgaagccaaggggtcctcgacccactagggagatgacagattcattgaagcct
gccagagttgaagacagacagatgcctgcagaccttctacaagccattcaacctggtctt
ccctctttgcttggtctattgcctaacacctcaggctacagttgcactacctcaactgtt
tcaggagcttatgcgatgcgtcagggcgttggttctggtgttgcccctacagcaggccca
gcacccaatggtactgatgatgcagcaccgactgcctcaacagcaggcacagaatcaact
tcttctaatccttccgctggcattccattcttggcaccagatcttgatatctcaaaacta
ttccaaagcctctatgacacaggaatcatgtcttctatttcctctctggttgataccaag
aaagagaaggtcaaagaagaagaagatgccaagaaaaagattcatgtggttgattttaag
gaggcctcaacttctttcaaagtaaagcaacctgctcttattgacattctctactctggc
attcagtgtagctcctgcggaactcgtttcccaccagagcaaacagaaaagtacagtgca
catttggactggcactttcgacaaaatcgtagagacaaggactcagctcgaaagcctcaa
agcagaaagtggtactacgatgtctctgactggattcaatttgaagagattgatgacact
gtcgataaagcgcaaaactggtttgacagtcagcaaagcgaagcctctaagtttgaagaa
gctgaagaggaagagattcaaagtgttccatccaaagattttgccgagggcgcaatatgt
gatttgtgccatgatagattcgaccagtattacaatgaggagaaggaagagtggcacctc
aaggactgcctggttgcggacgggctcacataccatccattttgctacaaagacttcaga
gtctctctggagtccaatgaagaacctcaagagcctgcagaagcagcagcagaagcacct
gagtctgcagaggcacctgaatctacagaggattctgggtctgcagaggctgctccagat
ggaactgacacagtttccactgctcccactgaagatgagccgatgcctgccattgaaata
aaaaaggagcccgaggatgtggaaatgaaaacgcaggattcagcccaagaggaagaggca
gttgaaacagaaggtgcagtgaaggaagagaagtcaactggggaagaagaaaatgttaag
agggaaacggcgtctgaggcagatccagcatcagctgtggcggtggatggtgttgatgag
aaagaaggtggcgagcaagttccagaagttaaagaagagggggccagtcccaacccaact
gtaaaacatgaattagatgacaaaccagccgacagctctgctgaaagagatcctgtggga
aatcacgatgaagctacagaagccaatgaagaaccagttgttaaagaagaagtagagact
actgaagaaccatctgaagcttccacagttgatgaagaggccgcagaacccaagaccctt
gatgaacctctaccccctcctgttaacacaaacgtgggtgttgtatcatgttcaattgat
ggcaacctggaccttgcacaagccccagcagctttgccgtcagttcctaatcgaataaaa
attaatatttctaagcctatttttgtgaaacctgaggagacggaagatgagtctgacaag
gccagtgagagtgaagaccaagacgaaaaggccaaggctggctcatcagagccttccagt
gagcaagcaatagtgctcaagcctaagcttgttggcagaaagcttacagagctacctgct
aaagtgagaggaaacgaaacatctgggctatgctcagtcatgtaa
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integrated database retrieval system
