Thrips palmi (melon thrips): 117647097
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Entry
117647097 CDS
T08251
Name
(RefSeq) uncharacterized protein LOC117647097
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117647097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpal03021
]
117647097
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117647097
Transcription machinery [BR:
tpal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117647097
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117647097
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
zf_UBZ
CTK3
Motif
Other DBs
NCBI-GeneID:
117647097
NCBI-ProteinID:
XP_034244505
UniProt:
A0A6P8ZAY0
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MSLESKTAVESFSRSLAELTVNSKPHINFLTLVAQQNSYQAEAIVQTVHDQLIKTSCLTK
LPILYLIDSIMKNVGKEYIDLFSPVLVSNFANIYAEVDKSTQQLMGFLRQTWNGIISPTD
LAKLDVHVHTLDQQWEVPSDTLKNTTIKILLNPNFLPQKIPRRDSSQEEPAKTNPVQEPD
NEIDEAEILREQLLLQKKQRELEKRRALVEKGSETNNENPLCKEVIEGSAEAPITIDLES
QVDSTTVDTYPEPSSTSSVSPSLDKPGELLELLTDLIAKQNQKTEKHPIETPKNKESRRA
ERYSERYSERYLRRRSYKSSHKYPRNKSENRSHDDKYFKQRDERNKYKYICSKKVPECKF
MSKDDQCNQSSTTPSPPRRNEDINQCKGKERRDSMCSDDSDSLIPATNRTSAALSSKGNS
VSPQPCMALSNFNPCHSTSPEQKQVPPDCISQTKTLIDFLNTPGQKKNITHNSRGYKKPL
LPTPISPALILESTANKEQEIKLQKEIDYNHGYGPENKLLMEPPSSSHQFVNHQPILPPP
LPPASSYVLGKIVEDTVKTILVDNVTKEVQFYGEIAVIDSGESIPREIMFRPGEASFSIN
GVVVRSTFDQPETKVYIGHQIFRVHFGAPTRELYVNDEAFQCQFNFPPEQIQLSSGEVLS
VQLFSEATPLVQLGSIRRDLVAGHVILTIDSLTQIRILLHAKPQRFDIDGVPHVLKFADA
LQTIFINDCSVDLNFGGPPLLLNVNGAKHLIQLSHLPCNIIPGEVNITSMAQTGNRPYTI
PQGLCHDPFMLSFNAPEVSPMESNSFEREKRRPKLRNCDRSKKRKTSSLPSTRSGESNKS
NLPGNDPPAYYPNTNIHSLFQSLCDVGLLIPRSQLNNDPEKVQSSDVEVHIVNFEDLSSL
KRKQPGMIEILYSGIQCNSCGVRFPPELTDTYRQHLDWHFKKNHNVRNTPLSRPWYCEKQ
SWVQSEGHSDTMDIEDCPTSKELDNSPTEIVSVPSHGFPQGTVCEMCGDMFDDFFNEDQD
EWHLKDCVLFEEKLYHPACLNDRQASPIIGSVVEIMMNGDETVPEQIETGDEGIADSPIL
QREEEVSKAESQVGIELVIKSIENKASGCVEAATFSCASATDMPVSSPTDVCDNVTNVQN
SIPIDDERKLLPTSPDVEIMCLKPKLVGRKLRQLPPTNKGSDTSNMCSVS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtcattggaatcaaagacggctgtggagagcttttcacgctccctcgcagaactaact
gtgaacagcaagcctcacattaatttcttaactctggttgctcaacaaaattcatatcaa
gcagaggccattgtacaaacagttcatgatcaacttatcaagacttcttgtcttacaaaa
ctccccatcctgtacctcatcgactctattatgaaaaatgtgggaaaggaatacattgac
ctgttcagtcctgttcttgttagtaactttgctaacatttatgcagaggttgataaatct
actcagcagttaatgggttttttgagacaaacttggaatggaattatttcaccaacagat
ttggcaaaacttgatgtacatgttcatactcttgatcagcaatgggaagtgccttctgac
actttgaagaacactactattaaaatactgctaaaccccaattttttgcctcagaagatt
ccaaggagagattctagtcaagaggagcctgctaaaactaatccagtgcaggagcctgat
aatgaaattgatgaggcagaaattttacgcgaacagttacttcttcaaaagaaacagcga
gaacttgaaaaaaggagagcgcttgttgaaaagggctctgaaaccaataatgagaaccca
ttatgtaaggaggtgattgaaggaagtgcggaagcccccatcacgattgacctggagagc
caagtggactcaaccacagttgatacatatcctgaaccgtcttctacctcatcagtgtcg
ccatctcttgataaacctggtgaacttttggaattgctcacggatctgatagccaaacaa
aatcaaaagactgagaagcatcctattgaaacaccaaagaacaaagaatctcggagggca
gaaagatattctgagagatattctgagagatatcttagaagaaggtcttacaaaagtagc
cataagtatcctagaaataagtctgaaaataggagtcatgatgataaatattttaaacaa
agagatgaaagaaacaagtacaagtacatttgttccaaaaaagtacctgaatgtaagttt
atgtcaaaagatgaccaatgcaaccaatcttcgacaacaccttctcctccgagaagaaat
gaggatataaatcagtgcaaaggaaaggaacgcagagattcaatgtgtagtgatgattca
gactctctgatccctgcaaccaaccgcacatcagctgctctctcttcaaaggggaacagt
gtttcaccccaaccatgcatggccttgtccaattttaatccttgccactcaacatcgcct
gaacaaaaacaggtgccgcctgattgcatctctcaaaccaaaactctaattgactttttg
aatacccctggtcaaaagaaaaacataactcacaattcaagaggatacaaaaagccactt
cttccaacgcctatttctcctgctttaattttggaatccactgctaataaggagcaggaa
ataaaacttcaaaaggaaatagattataaccatggatatggtccggagaacaagttgtta
atggaaccgccaagtagcagtcatcaatttgtgaatcatcagccaattcttccccctcca
ttgcctcctgcaagcagttatgttctaggaaaaattgtcgaagatactgtgaaaactatt
cttgtagacaatgtaaccaaagaagtacaattttatggagaaattgctgttatcgattct
ggtgaatcgatacccagagaaataatgtttaggccaggggaagcctcttttagtataaat
ggggtcgttgttcgcagcacatttgatcaacctgaaacaaaagtttacattggacatcaa
atatttcgggttcactttggagcaccaacacgagaactttatgtcaatgatgaagcattt
caatgccaatttaattttcctccagaacaaatacaattgtcctctggggaagttctcagt
gtgcagctgttctcagaagctactcccttagtgcagctaggttccattcgccgtgacttg
gtagcaggccatgtgattcttacaattgactcattgactcagattcgcattctattgcat
gccaaaccccaaaggtttgacattgatggggttccacacgttttgaaatttgctgatgcc
cttcaaaccatcttcattaatgattgctcagtagatttaaattttggtgggcctcctctc
ctgctaaatgtcaatggtgcaaagcatctcattcaactttcacaccttccttgtaatatc
attcctggagaggtgaacattactagtatggctcaaacaggaaacaggccttacactatt
ccacaaggtttgtgtcatgacccattcatgctcagttttaatgctcctgaagtctcacca
atggaatccaactctttcgagagagaaaaaagaagaccaaaattaagaaactgtgatagg
tctaaaaagcgcaaaactagttccctaccaagcacaagatctggagaatcaaacaagtct
aatctacctggcaatgatcctccagcctattacccaaacactaacattcatagtctcttc
caaagcctttgtgatgttggtctcttgataccaaggagccaacttaataatgaccctgag
aaagttcaatcctctgatgtagaagttcacattgttaattttgaagacttatcatcacta
aaaaggaagcagcctggcatgattgaaatactctactcgggtattcagtgcaactcatgt
ggtgtcaggttccctccagagttgacagacacatacaggcaacatttggactggcacttc
aaaaaaaatcacaatgtcagaaacactcctctttccagaccttggtactgcgagaagcag
agttgggttcagtctgagggtcatagtgatactatggacatagaggattgtccaactagc
aaagagcttgacaacagtccaacagagattgtcagcgtcccctcacatggtttccctcaa
gggacagtttgtgaaatgtgtggtgatatgtttgatgatttttttaacgaagatcaggat
gagtggcacctaaaggactgtgttttgtttgaggagaagctgtaccaccctgcctgtttg
aacgaccgtcaggcatcgccaatcattggttctgtggtggaaatcatgatgaatggtgat
gaaactgtacctgaacaaatcgaaactggtgatgaaggcatcgctgacagccccatcctc
caaagggaagaagaagtttcgaaagctgaatctcaagtaggaatagaactagtaataaaa
agtattgaaaataaagctagtggctgtgtggaagcagcaactttttcttgtgctagtgcc
actgacatgcctgtttcaagtcccactgacgtctgtgataatgtaactaatgtacaaaat
agtattccaattgatgatgaaagaaagttacttcccacatctccagatgtggaaataatg
tgcctcaagccaaagttggtcgggcgaaaattaaggcaacttcctccgactaataaagga
tctgatacatcaaatatgtgtagtgtgtcatag
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integrated database retrieval system
