Thrips palmi (melon thrips): 117647530
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Entry
117647530 CDS
T08251
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03013
Nucleocytoplasmic transport
tpal03015
mRNA surveillance pathway
tpal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117647530
09122 Translation
03013 Nucleocytoplasmic transport
117647530
03015 mRNA surveillance pathway
117647530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117647530
03041 Spliceosome [BR:
tpal03041
]
117647530
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117647530
Spliceosome [BR:
tpal03041
]
Complex C
Other components
EJC/TREX
117647530
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
Cornifin
RRM_1
Motif
Other DBs
NCBI-GeneID:
117647530
NCBI-ProteinID:
XP_034245196
UniProt:
A0A6P8Z5S4
LinkDB
All DBs
Position
Unknown
AA seq
1298 aa
AA seq
DB search
MRRTSLRARAKASEDVDTPPPKRATRRGRRKKSESSSDEESEEEVMPTPKSRRAIVEPEE
RPVPTTPAASRTRRSSRRVDVPVEETKPAETVDLEADNNADRDSNGSNETEADSSTVWKV
QNSNGSGTGIAKLKLCRSGPVEPEIASPRKRRGVREPEMHTIVEVEGNVAQQLAAVAQPS
PTPEPDSSGLTGKARAARRLEQVSKESSSSSSSSSSSSTSSSSSSEKSRSSTPDKAEEEE
EEAKEEDDEIQVIKEDSASVPSKSSEENEDSSSRDGLEVIENVAGTKTNKGDKVVVKVKT
VVPPGKAEETEKANAAAKAAEAQAKAAAEAKAKAAAEAKAAAEAKAKAAAEAKAKAAAEA
KAKAAAEAKAAAEAKAAQEAKAAAEAKAKAIAEAKAAQEAKAKAIAEAKAAAEAKAAAEA
KAKALAEAKAAAEAKAAAEAKAAAEAKAAAEAKAKAEAKAAEEAKAKAAAEAKAKAVAEA
KARAAEEAKAKAAEEAKTRAAEEAKAKAAEEAKAKAAEEAKAKAAEEAKAKAAEEAKAKA
AAEAKAKAAAEAKVKAAEEAKAAAEAKAAEEAKAAADAKAKAAAEAKAKAAAEAKAKALE
EAKAKAAEEAKAKAAADAKAAAEVKAKADAKAAADAEVAAKVQAQAKLDAAAKAAKVSEE
AVTPTEANADESDDEKESAAAPVQVPEEEDQSDDEPVMDLAPGSPVEHDTEMAEAEAVEA
REVEKARGRRRTHRSASSSSSSDRSSSSDSDSESNLKRKKTRHSSNERDTVPKKIVRGLA
PKQEDTQVVKELVKTEPVKDETPAPPTRLRRKLPSTSELAEKVSLRRTISAPSEDQTKSE
DGTASENPASSDATVDENKENSSSVPSPEEDIKPSEQPVARKRRWGSCKSIKKPVLCISS
DPLKNLIPDAKPVAESEVHLNLEEEGEVFDEDERSSNLERGRERIVVDRPLPPPGASLPE
TTRIVVNSSLEAEEKKIERKISVSNEGSRATSTKSPTPLKQRISTVLYITNLVRPFTVGQ
LRELLSRTGKFAEGGFWINSIKSQCYIEYENEDQAVETRHALHGVHWPISNRKALHVEFA
KKEDMIKAQSEAEGEPIVIRKSVLPSDTHHRDVKDLDEKIIKVAQPVREWDLGKVADAAD
AREGGLDDRKKREDDRRVRRDKRSVSPSHDGPARKAKRTEEAAPAKLLDDLFRKTKTTPC
IYWLPLTPEQIAEKEEMRRKHMAEHERLRAEMRRAHERNTQRGPGRDQGRDQGRDQGRDQ
GRDQGRDRDRERERERDRDRERERDRDRKDKRRGSKDK
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgcggagaacaagtttaagggcacgggccaaagcttctgaagatgttgatactccgcca
cctaaacgcgcaacacggagggggcgtcgcaagaagtctgaatcttcttcggatgaagaa
tcagaggaagaagtcatgcctacaccaaaatcgaggagagcaattgttgaacctgaagaa
agacctgttcccactactcctgctgcaagccgcactcgccgatcctcccgaagagttgat
gtgcccgtggaagagaccaaaccagcagagactgtagatttagaagcagacaacaacgca
gacagagactccaatggttcaaatgaaactgaagcagattcaagtactgtatggaaagtt
caaaactccaatggatcaggcactggtatagccaagttgaagttgtgtcgctcaggacct
gtggagccagaaatagcttcaccccgtaaaagaagaggagtcagggaacctgagatgcac
acgattgttgaggtggaaggaaatgttgctcagcagctagcagctgttgcgcagccaagt
ccgacgcctgagccggattcctctggtttaactggcaaagcacgagccgcgaggcgttta
gagcaggtatcaaaggaaagctcatcatcttcatcgtcttcctcctcctcctccacatct
tcttcatcttcatctgagaagtcacgatcatcaacccctgataaagctgaagaagaagag
gaggaagccaaagaggaggatgatgaaatccaagttattaaagaagattctgcgtcagtt
ccatccaaatcttctgaagaaaatgaagactcatcttctcgtgatggcttagaagttatt
gagaatgtggctggcaccaaaaccaacaagggagacaaggtagttgttaaagttaaaaca
gttgtgccacctggaaaagcagaagagaccgagaaagctaatgctgccgctaaggctgca
gaagctcaggctaaagcagcggccgaagccaaggctaaagctgcggccgaagccaaagcc
gccgctgaggccaaggctaaagcagctgcagaagcgaaggctaaagctgctgcagaagcg
aaggctaaagccgccgccgaagccaaggcagctgccgaagccaaggccgcgcaagaagcc
aaggccgccgcagaagccaaagcgaaagcaatcgcagaggccaaggccgcccaagaggcg
aaagcaaaagcaattgctgaggccaaagccgccgcagaagccaaagccgccgcagaggcc
aaggctaaagcattagcagaagccaaggccgccgcagaagccaaggccgccgcagaagcc
aaggccgccgcagaagccaaggccgccgcagaagccaaggctaaggcagaagccaaggcc
gctgaagaagccaaagccaaggcagctgcagaagccaaggccaaagcagtagcagaagcc
aaggccagggccgccgaagaagccaaggccaaggccgccgaagaagccaagaccagggcc
gccgaagaggccaaggccaaggccgccgaagaggccaaggccaaggccgccgaagaggcc
aaggccaaggccgccgaagaggccaaggccaaggccgccgaagaggccaaggccaaagca
gcagcagaagccaaggccaaagcagcagcagaagccaaggtgaaggccgccgaagaggcc
aaggcagcagcagaggccaaggccgctgaagaagccaaagcagccgcagatgccaaggct
aaggcagctgcagaagccaaggctaaggcagctgcagaagccaaggctaaagccctggaa
gaagccaaggccaaggccgctgaagaagccaaagccaaggccgctgctgacgcgaaggct
gccgcagaggtgaaggccaaagcagatgccaaagctgctgctgacgccgaggttgctgcc
aaagttcaagctcaggccaaacttgacgcagcagccaaagctgcaaaggtatccgaagaa
gcggttacacccactgaagccaatgctgacgaaagtgacgatgaaaaggaatccgctgct
gcacccgtacaagtgcctgaggaggaggaccagtctgacgacgagcccgtgatggacctt
gctccagggtcacctgtggaacatgatactgagatggctgaagctgaagctgtagaagcg
agagaggtggaaaaagctcgtgggaggagacgtactcatcgctcagcaagcagtagttca
tcttcagaccgtagttcaagttcagactcggattctgaaagtaacttaaaacgaaagaag
accaggcattctagtaatgaacgtgatacagttcctaagaaaattgttcgtggtcttgct
ccaaagcaggaagacactcaagttgttaaggaacttgttaagacagaacctgttaaggac
gagacgcctgcaccacccacacggttgcgcagaaagcttcctagtacgtctgagctggct
gaaaaagtttctctcagaagaactatctctgcacctagtgaggaccagacaaaatctgaa
gatggaacggcatcagaaaatccagcatcttctgatgctactgtagatgaaaataaggag
aattcaagcagtgttccaagcccagaggaagacatcaaaccttctgaacagccagtagca
cgcaagcgaaggtggggttcatgcaagagtattaagaagcctgtgttatgtatatcatca
gatcctttaaagaatcttattcctgatgctaaaccagttgctgagagtgaggttcattta
aatcttgaagaagagggagaagtgtttgacgaggatgaacgatcatcgaatttggagaga
gggagagaaagaattgtagttgaccggcctcttcctccaccaggtgcttccttgcctgaa
actactcgcatagttgttaattcgtcattagaagctgaagagaaaaaaattgaacgaaag
atttctgtgtccaacgaaggctctagagccactagtacaaaatcgcctaccccattaaaa
caaagaatttccactgtcctttacataacaaatttggtgagacccttcactgtgggccaa
ctgagggaacttctctctagaactggaaaatttgctgaaggaggattttggattaatagc
attaagtcacaatgttacattgagtatgaaaatgaggatcaggctgtagaaactaggcat
gccttgcatggggtgcattggcctatttccaaccgcaaagcacttcatgtagaatttgcc
aagaaagaggatatgataaaagcgcagtctgaagcagaaggtgaacccattgttatcaga
aagtctgttctgcccagtgacactcatcacagagatgtcaaagatcttgatgagaaaatt
ataaaggtggctcagcctgtgcgtgaatgggacctcggcaaggtggcggacgcggcggac
gcgagggagggcggtctcgacgacagaaagaagagggaggacgatcggcgagtgagacga
gacaagcggtcggtgtcgccatctcatgacggcccagcccgcaaggcgaagagaactgaa
gaagcagcccctgctaagttactggatgacctgttccggaaaacaaaaaccacgccttgt
atctactggctgccgctcacgcctgaacagattgccgagaaggaggagatgcgtcggaag
catatggcggagcacgagaggctgcgggctgagatgaggagggcccatgagagaaacacg
caacggggcccgggccgagaccaaggccgggatcaaggcagagaccaaggcagagaccaa
ggccgcgaccaaggccgcgatagagaccgcgagagagagagagaaagagaccgagaccgc
gaacgtgagcgagacagggaccgcaaggacaaacgtcgtggtagcaaagacaaatag
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