KEGG   Thrips palmi (melon thrips): 117647970
Entry
117647970         CDS       T08251                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
tpal  Thrips palmi (melon thrips)
Pathway
tpal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117647970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpal03019]
    117647970
Messenger RNA biogenesis [BR:tpal03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     117647970
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     117647970
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 117647970
NCBI-ProteinID: XP_034245891
UniProt: A0A6P8Z775
LinkDB
Position
Unknown
AA seq 293 aa
MAGVLLSEAEKTFILHGVQSDLRNDGRSRQDYRPIELELDIVTHANGSARVRLANTDVLV
GVKTEIDVPKPEKPEEGKVEFFVDCSANATPVFEGKGGEELATEISNFLASSFASSMSFD
LKTLCIIKGVQCWKLYVDILILECGGNLFDAVSLAVKAALHNTMVPRVETVAMDGGNVDL
QLSGDPYDCWRLDTKNMPCLVTLSKIGEHFIVDSTAEEEECSMASLVFSVTDGGRLNSLC
KTSVGSLHPHTLAEALKVGVDVGVRLNKALDQALAREDRRLEADKPERFGFLK
NT seq 882 nt   +upstreamnt  +downstreamnt
atggcaggcgtgcttctcagtgaggccgaaaaaacctttattctgcacggagttcagagt
gatctccggaatgatggtcgttccagacaggactatcgtcccattgagctggagctcgac
atcgtcactcacgccaacggatctgccagagtacgccttgcaaatactgacgtcctagtc
ggcgtaaaaacagaaatcgacgtacccaagccggagaaaccagaggaaggaaaagtagaa
ttctttgttgactgttcagcaaatgctactccagtatttgaaggtaaaggaggtgaggag
ttggctactgaaataagcaactttctagccagttcatttgcgtccagcatgtcatttgac
ttaaagaccttgtgtattatcaagggagtgcagtgctggaaattatatgtagatattttg
attctcgagtgtgggggaaatctgtttgacgcggtttcactggctgtcaaagcagcactg
cacaacaccatggtccccagggttgaaactgtggccatggatggaggcaacgtagattta
caactctctggcgatccttatgactgctggaggctggataccaaaaatatgccatgtttg
gtgaccttatctaagattggggaacactttattgtggattcaacagctgaggaggaagaa
tgcagcatggcatcattagttttttctgtgactgatggaggcagactaaattccctatgt
aagactagtgtcggtagtttacatcctcataccttggcagaggcactgaaggtgggtgtt
gatgtaggtgtaagactcaacaaggcactggaccaagcacttgcgagagaagaccggcgt
ctagaagcagacaaaccagaaagatttggatttttaaagtga

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