Thrips palmi (melon thrips): 117647970
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Entry
117647970 CDS
T08251
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117647970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117647970
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117647970
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
117647970
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117647970
NCBI-ProteinID:
XP_034245891
UniProt:
A0A6P8Z775
LinkDB
All DBs
Position
Unknown
AA seq
293 aa
AA seq
DB search
MAGVLLSEAEKTFILHGVQSDLRNDGRSRQDYRPIELELDIVTHANGSARVRLANTDVLV
GVKTEIDVPKPEKPEEGKVEFFVDCSANATPVFEGKGGEELATEISNFLASSFASSMSFD
LKTLCIIKGVQCWKLYVDILILECGGNLFDAVSLAVKAALHNTMVPRVETVAMDGGNVDL
QLSGDPYDCWRLDTKNMPCLVTLSKIGEHFIVDSTAEEEECSMASLVFSVTDGGRLNSLC
KTSVGSLHPHTLAEALKVGVDVGVRLNKALDQALAREDRRLEADKPERFGFLK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgtgcttctcagtgaggccgaaaaaacctttattctgcacggagttcagagt
gatctccggaatgatggtcgttccagacaggactatcgtcccattgagctggagctcgac
atcgtcactcacgccaacggatctgccagagtacgccttgcaaatactgacgtcctagtc
ggcgtaaaaacagaaatcgacgtacccaagccggagaaaccagaggaaggaaaagtagaa
ttctttgttgactgttcagcaaatgctactccagtatttgaaggtaaaggaggtgaggag
ttggctactgaaataagcaactttctagccagttcatttgcgtccagcatgtcatttgac
ttaaagaccttgtgtattatcaagggagtgcagtgctggaaattatatgtagatattttg
attctcgagtgtgggggaaatctgtttgacgcggtttcactggctgtcaaagcagcactg
cacaacaccatggtccccagggttgaaactgtggccatggatggaggcaacgtagattta
caactctctggcgatccttatgactgctggaggctggataccaaaaatatgccatgtttg
gtgaccttatctaagattggggaacactttattgtggattcaacagctgaggaggaagaa
tgcagcatggcatcattagttttttctgtgactgatggaggcagactaaattccctatgt
aagactagtgtcggtagtttacatcctcataccttggcagaggcactgaaggtgggtgtt
gatgtaggtgtaagactcaacaaggcactggaccaagcacttgcgagagaagaccggcgt
ctagaagcagacaaaccagaaagatttggatttttaaagtga
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