Thrips palmi (melon thrips): 117649291
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Entry
117649291 CDS
T08251
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117649291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117649291
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117649291
mRNA degradation factors
5'-3' decay
Decapping complex
117649291
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117649291
NCBI-ProteinID:
XP_034247796
UniProt:
A0A6P8ZAS5
LinkDB
All DBs
Position
Unknown
AA seq
800 aa
AA seq
DB search
MAGTFFDFDSTLPPGDDPGQGLEEEEEQQYDALNDETFGTATEDDWEQDHEQLSKLTETS
RGWNNDFDDFNHNDHDDLRNGQDHLEASLSQLVLEDNDEIAVNRKSSSHIPHSNLVPYPE
SPNALRNSVWAVGKHDGPLSASSPLRPRVALPQGVKNVCTVEELERNLLQMRSGGVTGSS
LPPPPGLGNPSPGGALRLEDLERKITQVAPQPRMNMIPDMPSRFPPGLGRGNIMNTLQNQ
RLIGPPGHIEAPKVPLQQLPLGFGSSNIPPYFAIRQQHSFQPIQPGPGMMPLGPHQQQQH
LPFNMNGPRIPPPHMNNHLAHHLHQQHSQHPQHHQHMAHQQHRNTHQQPHHYHQPHHHQQ
QQQHHHHQHQQQQHRVNGAGDYDEYAGLMTPWQKQWLLNIQTLQLNVGVPYVVDYYYTVY
KNRKERRNSDSRKSDSFYGRPESVRLGKDRAESTKPGRERPPSVMGPAKAYTPLQFENSL
GKLQCVSVTAPRKLIDMEIMASEGPDGQSTQKDLKKTKQLLLEIERLYVLLLELEDAFDP
QAIEAAAEAAATRAMRDPPDNEPEPEKPSPEELLTRMTSVLLQGDKIFGFMGIRKGKTFL
LRLLPHIPADAGLHFAFWGQVLYGLSALVRRDQADGLLPRFLPELKRWLEVSDLPQILKL
TTSLVAEASLKSKSSRSALSAAVNSKFGVLALGAILTASEKHLSKMDDEHKNLWGEFISS
VAVVAETARVADDNSAQRASPIAPETLQRHIDACDVAVASKYGAFLKRLFLSDTLKTDTV
KAPEKTIRRANDSTIPSILN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggctggaacttttttcgatttcgacagcacactgccgcctggggatgacccagggcag
ggcttagaggaagaagaggaacagcaatatgatgctctcaatgatgaaacctttggaact
gctacggaggatgactgggagcaggaccacgaacagctgtcaaagctaacagaaacctca
cgaggatggaataatgattttgatgatttcaatcataacgaccatgatgaccttcgaaat
ggacaagaccatcttgaagctagtttatcgcagttagtactggaagacaatgatgaaata
gcggtaaacaggaaatcatcttctcatattcctcattcaaatttagtgccgtatcctgaa
tcacctaacgctctccgcaattctgtgtgggctgttggtaaacatgatggacctttgtct
gcatcatctccacttcgccctagagttgctttacctcaaggcgtcaagaatgtttgcact
gttgaggagctggaaaggaatcttctccaaatgcgcagtggaggtgtcactgggtcttct
ttaccacctccacctggtttggggaacccaagtccaggtggtgcattacgcctcgaagat
ttagaacgaaaaattacccaagtagcaccccagcctagaatgaatatgatacctgacatg
ccatctagatttccccctggtttgggaaggggcaatatcatgaatacacttcaaaaccag
agacttattggccccccaggacacatagaagccccgaaggtacccctacaacaattgcct
ctcggttttggtagctcaaatattcctccgtactttgccattcgacaacaacattctttt
cagccgatacaaccaggccctggaatgatgccgctgggtccacatcagcagcagcaacac
ttaccatttaacatgaatggaccaagaatacctcctcctcacatgaataaccaccttgca
caccatctacaccaacagcattctcagcaccctcagcatcaccaacacatggcccatcaa
cagcatagaaatactcaccaacaacctcatcactaccaccaaccccaccatcatcaacag
caacagcaacatcatcatcatcaacaccaacagcagcaacacagagtgaatggtgctgga
gactatgatgagtatgctgggttgatgacaccatggcaaaagcaatggttgctcaacatt
caaactttgcaactcaatgttggtgtaccttacgttgtggattattattacactgtttac
aagaatcgtaaagaaaggagaaattcagactctaggaaatcagatagtttctatggaaga
ccagaatctgttcgattgggaaaggatcgagctgaatcaacaaagccaggacgtgaacgt
ccaccatctgtgatgggaccagccaaagcatataccccacttcagtttgagaattctctt
ggaaaactccagtgtgttagtgttactgcgcctcgtaaactcatagatatggaaattatg
gcatcagagggaccagatggccagtcaactcaaaaagatttgaagaagacaaagcaactt
cttcttgagattgaaaggttgtacgttttgcttctggagctggaagatgcatttgaccct
caggccatcgaagctgcagctgaggctgctgcaactagagcaatgcgggatcctccagac
aatgaaccggagcctgaaaaaccttcacccgaagaacttcttacacgaatgacaagtgtt
ctattgcagggtgataaaatctttggattcatgggaattcgaaagggaaagacattcttg
ctaagattgctcccccatataccagctgatgcaggcttgcattttgccttttggggtcag
gtgctttatggattatctgcactagtgagacgtgaccaggcagatggccttcttccacgg
tttctccctgaattaaagaggtggctggaagtaagcgatttacctcagattttgaaactc
actacttctctcgttgctgaagctagtttaaagtcaaaatccagtcgaagcgctctttct
gcagcagtcaatagcaagtttggtgtcttagctttaggagcaattctgactgcttctgaa
aagcacttgtccaaaatggatgacgaacataaaaatctctggggagaatttatatcatct
gtagctgtagttgctgaaacagctcgtgtggccgatgacaactctgctcagcgagcttcc
cctattgctcctgaaactttgcagagacatattgatgcttgtgatgtagctgttgcaagt
aaatatggggcttttttaaaacgcttgttcttaagtgacactcttaagactgatactgtg
aaagcaccagagaagacaattagaagagctaatgattcaacaattccctcaatacttaat
taa
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