Thrips palmi (melon thrips): 117649434
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Entry
117649434 CDS
T08251
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117649434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117649434
Enzymes [BR:
tpal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117649434
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117649434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_1
Motif
Other DBs
NCBI-GeneID:
117649434
NCBI-ProteinID:
XP_034248118
UniProt:
A0A6P8ZSB4
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MDVTRKNYYDILPDLKKAVSEAEFISIDLELTGLTTGGRELDAMPFDTPRQYYEKVHRKA
LDFLPLQLGICIFQYDAKGERYTYQAYNFYTFPFSNLKGFPNNTFQCQSSSLAFLSNCGF
DFNKAFGEGIPFLTQQDEDKLRTSIEDRHQKMGRESTKETYSDIPVPDDMKLNLNNNMKK
IKEFLDDGSDNRKDYFILDRCNAFMRRLLYQEVAKEFGDAVQLETCDDSSFAMKISRGGG
EELRKLREEEKMKKEWKEFEETVGLSHLIKMISESGKLVIGHNCFLDVCHMVNRFRYSLP
SNYDNFKELVHHIFPRVLDTKYMSIAAQFKELIPSNVLGHMRGTLSEAPFEMPIVEGNME
GRSYSDLVDKSHEGGYDAFMTGQCFLSMCQYLAKDVGRKLNSLNSISDILENFENRLYLM
RVQDVPFMRLGAPDTKPPRNHVFHLKFPREWRQYEVVELFKPFGSVFISFIDDRSAFVAL
HKRDQAKVVMKTMTGNDTYKVTSFSTFQKQTERKFLPDVQPSSPSLEVLRKRKSRDVSES
PDLFKKHRGLEQRHKPAELLSTQYLLGIIMNRFYLDWLKHPVEPIAFKAFTLTMKMMLGL
FLMISICYMIWYSLVIGKR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggacgtaacacgtaaaaattattatgatatccttccagatctcaaaaaagctgtgtca
gaagctgaatttatctctattgatttagagttgactggtttgacgacgggtggtcgagaa
ctggatgctatgccatttgacacgccacgccagtattatgagaaagttcatcgcaaagca
ttagactttctaccccttcaattgggtatttgtattttccaatatgatgcaaaaggcgaa
aggtatacgtatcaagcatacaatttctacacctttccattttccaacttgaaaggtttt
ccaaataacacatttcaatgccaaagctcaagcctagcattcctttcaaattgcgggttt
gatttcaacaaggcctttggggaaggtatccctttcttaacgcagcaagacgaagacaaa
ttgaggacaagtattgaggatcggcaccagaagatgggccgggaaagtacaaaagagacg
tatagtgatattccggttcctgatgatatgaaactgaatcttaataataatatgaagaaa
attaaggaatttttagatgatggaagtgacaacagaaaagattattttattctggatcgc
tgcaatgcttttatgaggaggcttttgtatcaagaggttgctaaagaatttggagatgca
gttcagctagaaacctgtgatgattcaagctttgctatgaaaatttcaagaggtggagga
gaagagctaaggaaacttcgagaagaggagaaaatgaaaaaagagtggaaagaatttgaa
gaaactgttggcttatcacacctgatcaagatgatttcagaatctggcaaattggttatc
ggtcacaactgcttcttggatgtgtgtcatatggtcaatcgattccgttattccctgcca
tccaactatgacaacttcaaagagcttgttcaccatatattcccgagagtgctggatact
aagtacatgtccattgctgctcaattcaaggagctgattccctcaaatgtcttgggtcat
atgagagggactctgtctgaagctccatttgaaatgcccattgttgagggaaacatggag
ggccgctcctacagcgatttagtcgataaatcacatgaaggtggctatgatgcatttatg
acaggacaatgttttctctccatgtgccagtacctcgcaaaagatgtggggcgaaaatta
aacagtctgaattccattagtgacattcttgaaaattttgagaaccggctgtaccttatg
agagtgcaagatgttcctttcatgagacttggggctccagataccaagccccctaggaat
catgtgtttcatttaaagtttcccagagaatggagacagtatgaagtagttgagttattc
aagccatttggatcggtgtttatatccttcatcgacgaccgctctgcttttgttgcattg
cacaaaagagatcaagcaaaagttgtcatgaaaactatgacaggaaatgacacatacaaa
gtcacatcatttagcacatttcaaaagcaaacagaaagaaaatttcttcctgatgttcaa
ccgtcatctccaagccttgaagttctccgaaaacggaagtcaagagatgtgtcagaatca
ccagacctgtttaaaaagcaccgtggccttgaacaacggcataagccagccgagctgttg
agcacccaatacctccttggcatcatcatgaaccgtttctacctggattggctcaaacat
ccagtggagcctattgcctttaaagccttcacccttaccatgaagatgatgttgggtctc
tttctcatgatatccatttgttatatgatatggtactcgttagttattggcaaacgataa
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