Thrips palmi (melon thrips): 117650621
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Entry
117650621 CDS
T08251
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
tpal
Thrips palmi (melon thrips)
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117650621
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
117650621
3'-5' decay
Other 3'-5' decay factors
117650621
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
ResIII
PAM2
zf-CCCH
AAA_22
zf-C2H2_jaz
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
117650621
NCBI-ProteinID:
XP_034250064
UniProt:
A0A6P8ZY96
LinkDB
All DBs
Position
Unknown
AA seq
1815 aa
AA seq
DB search
MARGKKHSKKQQNASSQVERKGLGPKHHQHVKAAVKMQDKPAGSAAVRTPKANGVKHQPN
MSSGLSSACSSLAFNGLDSAKINQQTSEDFKRCEESHPSTDQCDPDSDGENGGSSTLTNG
CGMHSSKTMCDYCSLNFKSESELNVHCKSEAHQIVVMSDGGREWEYRPPPRGVMAEGYSL
CENWDKTCKYGTQCVEAHSAEELQEWCERFEYRQKKIQQAEQENLLGKSYTEHLLEKWTS
NPDNFLKENVDYAEDCVSENQLTTTVSKDSKTDWTFLVKTSKILKAVVFLQFPDRHRFSI
KCVKSVVGGETADWSQEDCQEWILPETNGRSIENLQNNNPDFEYKHSVCVEFSSDIYGTF
RQTVAFDFGVEPLLVKHLCVDVRPASFASNVDELKKELFLEERWDENNAEIMKFSCSDEA
YSAYSSNGSEDLLRLYPTPTPSTFTLTQSTVSERTITKNNYSSRMHELLGVEEMARYQQV
ARFNVRAKLNVTKSYLLAPAGTTHSTAKYAQNDQLYAVMQLTQAISEDTAAGRLILNNCT
SVLLCAAGKSSKLSEEDSVTKDPVKRKVFEALIEDKGKNVIYLKLSSEAVKEYNIVGGKV
FHAEVQFQLNRLQYCEWHHAVDSIDDYKILFPETFLEPNIPWSPQRQWKEIKETKLNVKQ
KEAIVAITTPLSVQLPPVLIIGPFGTGKTYTLAQALKQLLAVPDSRVLVCTHSNSAADIY
INDYLHPYVLSGYEAARPLRIYYHKRWVTTVHPTVQKYCLIKTGVDGTRRFQLPTAEDIM
KHRVVVVTLNMSMVLSTLGLKKGFFTHIFLDEAAQAMECEAIMPLAVAGERTRIVLAGDH
MQLNPELFSPFAKERNLHMSLLERLYDHYPTTFPCKILLTENYRAHEAIIKFTSDLFYDQ
KLVCSGRQPGHPKFHPLTFFACRGEDVQETNSTGHYNLAEVYEIAERVIELRKCWPPEWG
DLNDQSIGIMTPYADQVFRIRCELRRKNLGGVSVERVLNVQGKQFRAIFISTVRTRKTCD
TRIKSNGSEESEYGFLSNSKLLNTAITRAQSLVAVVGDPIALCSLGRCRKVWERYIQSCD
EKNSLFGMPWSTIQAHLDGVEFKTSYVLNPLAPEFIPRAKSNLYNNSGNESLVLNGYHSH
LAFFDQSVPGSGQSQPPFPYPQQWSGPRHRSGQGPGVRPLPAPVPAAAAPVTAPKAAPPP
GLSPGSGVGPGSGSGQQPHVDGQFYPNMYRVPRVHNTPPPQPQLFGAFPAPPPQAQKWGV
PPDSPHRSAMQQAYLVGTCRFQSSPEGIQPSAPLGAPRGPMHVVSQAANPWPGTGHQASQ
QASHQGSPVAHVAPPGLAANANSKGFEIAALENKLLMQGGVDIPSGEFTGNNSGKLNGIV
LDSAVQAFDTSNSIQHIESYSAQVAQSLQQPPQQIIPQSVNPTFFSNRQTPYQLQFAQEQ
TLLQQLSQQHQPPGNQRPVQQQQPVPNQPVMATGPFLAIVQNPLNHPVTLNGAQIQQQQQ
LQQHQLQQQQHHQQQLQQLQQLQQQRQQMNHQLLHQHEQQLQNQLMQVQPISEAFVHEQR
LREVENQLRLQQEQHRQQQLQLAILQERRKLLLGHILTPLVNCKPEWNKLIPRGVNLLDM
VDNKSQQEEWFNHLIRHGQSEVAKMFAEFMVLCVRAITATSSDLRQPSPSPLLNKIQTPD
QNIKMTVNSAESLKATSLLSSSSNHLEPLTTLVPEDDKTNVVSGKGTDELVIMMKDLDPK
YMLGSDALLNGGKSVWAIAQDELERCNRNGVRLKAGNAAMQKSLQKSDTFDSDDSGDELL
SSINRQLNLQQSVDD
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaggaaagaaacattcaaaaaagcaacaaaatgcgtcgagtcaagttgaaaga
aaagggttaggtcccaaacaccatcaacatgtaaaagcagctgtcaaaatgcaggacaaa
cctgcgggtagtgctgctgtgagaaccccaaaagccaatggcgttaaacatcagcctaat
atgtcatctgggctctcttcagcctgctccagtcttgcatttaatggacttgattctgca
aagatcaatcaacaaacttcagaagatttcaaacgttgtgaagaaagccatcccagcaca
gaccagtgcgaccctgattctgatggggaaaatggtggcagctcaacacttaccaatggc
tgtggcatgcacagctctaaaactatgtgtgattattgctcattaaattttaagagtgaa
tcagagttaaatgttcattgtaaatctgaggcccatcaaattgttgtaatgtcagatggt
ggaagagaatgggagtatcgtccacctcctcgaggggtaatggctgaagggtattcactg
tgtgagaattgggataagacatgcaaatatggaacacaatgtgttgaggctcacagtgca
gaagaattgcaagaatggtgtgaaagatttgagtaccgtcaaaagaaaatccaacaagca
gaacaggagaatctccttggaaaatcttacactgaacatttgcttgaaaagtggacatca
aatccagacaattttcttaaagagaatgttgattatgctgaagattgtgtttctgagaat
cagttgacaacaactgtctctaaagatagtaaaacagattggaccttccttgtgaagacg
tcaaaaatactgaaagctgttgtcttcttgcagttcccagataggcatcgcttttcaatc
aagtgtgtcaaaagtgttgtgggaggagaaactgcagactggtcccaagaggattgtcaa
gaatggattttgccagaaacaaatggcagatctattgaaaatctccaaaacaataaccct
gattttgaatacaaacattctgtgtgtgtagaattttcttctgacatttatggaacattc
cgtcagaccgttgctttcgattttggagttgagccattactggtaaagcatttatgtgtt
gatgtaagacctgcctcatttgcatctaatgttgatgagcttaaaaaggagctctttcta
gaggagagatgggatgaaaacaacgcagagataatgaagttctcttgttctgacgaggcc
tattctgcctactcctcaaatgggtcagaagacttgcttcgattataccctactcctacg
ccatcaacttttacccttactcagtcaactgtgtcagagcggacaatcacaaaaaacaat
tactcctcaaggatgcacgaattattgggtgttgaggaaatggcacgatatcaacaggtg
gctcgcttcaatgttcgtgctaagttgaatgttaccaagtcatatcttttagcccctgct
ggcaccactcatagcactgcgaaatatgcacagaatgatcaactctatgcagtgatgcaa
ctcactcaggcaatctcggaggacacagcagcaggccgcctcatcctcaacaattgtacc
agtgtccttttatgtgcagccgggaaatcttcaaagctgtcagaggaagattctgttaca
aaggatcctgtcaaacggaaggtctttgaagctctcatcgaagacaaagggaaaaatgtc
atttatttaaagttgtcttcagaagctgtgaaagaatacaacattgttggtggaaaggtt
ttccatgctgaagtgcaatttcagttgaatcgcttacaatattgtgaatggcaccatgct
gtggacagtattgacgactacaaaattcttttccctgaaacatttttggaacccaacatt
ccctggagtcctcaaaggcaatggaaagaaattaaggaaactaaattaaatgtcaagcaa
aaggaagctatagttgccattacaacacccttaagtgttcaacttcctcctgttctcatt
attggtccttttggcactggcaagacctacaccttagctcaggcactaaaacagctgctt
gctgtgcctgattctcgtgttcttgtctgcactcactccaactcggcggccgacatttat
atcaatgactacctccatccctacgtgcttagcggctatgaagccgcccgccctcttcgc
atatactatcacaagcgctgggtcactactgtacatccaacagtgcaaaagtactgcttg
atcaaaactggtgttgatggaacaaggcgatttcaacttccaacagcagaagacataatg
aaacacagagttgtagttgttaccttgaacatgtcaatggttttatctactttgggcctc
aagaaaggatttttcactcacattttcctggatgaagctgcccaggctatggaatgtgaa
gcaataatgcctcttgctgtagcaggagagagaactcgtattgtactggcaggagatcac
atgcagctaaatcctgaactattttctccttttgctaaagagcgcaatctacacatgtca
ttgctggagcgcttatatgatcattatcctactacttttccatgcaaaatattgctcaca
gaaaattacagagctcatgaagcaatcataaagttcacttcagacctgttttatgatcaa
aagctggtgtgcagtggacgacaaccgggtcatcccaaatttcaccctctgacgtttttc
gcatgcagaggtgaagatgttcaggaaactaactcaactggtcattacaacttggctgag
gtttatgaaatagctgaaagagtcatagaactgaggaaatgttggcctccagaatggggt
gacctcaatgatcagagtataggaataatgacaccgtatgctgatcaagtatttcgaatt
cgatgtgaattgagaaggaagaatcttggtggcgtatcagttgaacgtgttttaaatgtg
caaggtaaacaatttcgtgccatattcataagcactgttagaactcgaaaaacttgtgac
actcgtatcaaaagtaacggcagtgaagaaagtgaatatgggtttctttccaattccaag
ttgttaaacactgctattacaagagcacagtcattggtcgctgttgtgggagaccccatt
gcattatgctctctgggacgatgcaggaaagtttgggagcgctacattcagtcttgtgat
gaaaaaaatagtttgtttggaatgccttggtctacaattcaagctcatttagatggtgtt
gaatttaaaacaagctatgtgttaaaccctcttgcaccagaatttatacctagggcaaaa
tctaatctgtataacaactctgggaatgaatccttggtgttaaatgggtaccactcccac
ttggcattttttgaccagtctgtacctgggtctgggcaaagccaacccccattcccatac
ccacagcagtggtctggacctcgacataggtctggtcagggacctggggtgaggcccttg
cctgcccctgtgcctgctgccgctgctcctgtgactgcacctaaagctgcacctccacct
gggctctcacctggttctggtgttggacctggatctggatctggacagcaaccacatgtt
gatggtcaattttacccgaacatgtatcgagttcctcgtgtacacaacacccctcctccc
caaccacagctctttggggcgttcccagcgccccctccccaagcacaaaaatggggtgtg
ccacctgattccccccaccgttcagcaatgcagcaagcatacctagttggcacttgcagg
tttcagtcttcacctgaaggcattcaacccagtgctcctttaggtgctcctcgtggccct
atgcacgttgtttcccaggctgcaaatccgtggccgggaactggccaccaggccagccag
caggccagccaccagggcagccctgttgctcacgttgctccacctggtttagcagccaat
gccaactccaagggctttgaaatcgctgcccttgaaaacaaattgctgatgcagggtggt
gttgatattccaagtggtgaattcactggaaataactcaggcaaacttaatggaattgta
ttggattctgctgtgcaagcatttgacacaagcaatagtattcaacatatcgagtcctac
tcagcgcaagttgcacagtctctgcaacaacctccacaacagattataccacaatctgtc
aatcccaccttcttctcaaacaggcagaccccataccagttgcagtttgcccaagagcag
accttgcttcagcagctgtctcaacagcatcaaccaccaggaaatcagagacctgttcag
caacagcaacccgtacccaatcaaccagtaatggccactggaccgtttctggctattgtt
caaaatcctctaaatcatcctgtaacattaaatggtgcacaaatccaacagcagcagcag
ttgcaacagcatcaactgcaacaacaacaacaccatcagcagcaattgcaacaacttcag
caacttcaacagcagcgacaacaaatgaatcaccagctgcttcatcaacatgagcagcag
ctgcagaaccaattgatgcaggtgcagccaatatctgaagcatttgttcatgagcaaagg
ctgagagaagttgagaaccagctaagactgcagcaagaacagcaccgccaacagcaacta
cagttggcaattctacaggagcgtaggaaactgttactcggccatatcctgacacctcta
gtaaactgcaaacctgaatggaataaacttattcccagaggagtcaacttgcttgatatg
gtggacaacaaaagccaacaggaagagtggtttaatcacttgattcgacacggtcaatct
gaagtagcaaagatgtttgcagaattcatggtgttgtgtgtcagagcaatcacagccaca
agttccgatctaaggcaaccctcacccagtcctcttttaaacaaaattcaaacacctgac
caaaatattaaaatgactgtgaattcagcagagagtttgaaggcaacttccttactatca
agttcaagcaaccaccttgagcccttaactacattggtcccagaggatgataaaaccaat
gttgtatcaggaaaggggactgatgaactagtaattatgatgaaggacttggaccctaaa
tacatgttaggaagcgacgcattattaaatggtggaaaatctgtgtgggctattgcacaa
gatgagttagaacgctgcaatcgcaatggtgtaagattgaaagcaggaaatgcagccatg
cagaagtctctccagaaatccgacacatttgacagtgatgattcaggtgatgagctgctt
tcatcaatcaatagacaactcaacctacaacaatcagtggatgactga
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integrated database retrieval system
