Thrips palmi (melon thrips): 117650689
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Entry
117650689 CDS
T08251
Name
(RefSeq) ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117650689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117650689
03036 Chromosome and associated proteins [BR:
tpal03036
]
117650689
Enzymes [BR:
tpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117650689
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117650689
mRNA degradation factors
5'-3' decay
Decapping complex
117650689
Chromosome and associated proteins [BR:
tpal03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117650689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DS
CMS1
AAA
Motif
Other DBs
NCBI-GeneID:
117650689
NCBI-ProteinID:
XP_034250163
UniProt:
A0A6P8ZXM0
LinkDB
All DBs
Position
Unknown
AA seq
442 aa
AA seq
DB search
MTEIVANHVLGGMNMNNQKVDLDDGIGWKSKLKIPPKDQRIKTSDVTDTRGNEFEEFCLK
RELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYSIPVLEQVDPKKDC
IQALVIVPTRELALQTSQICIELAKHMDVKVMVTTGGTNLRDDIMRIYQKVHVIIATPGR
ILDLMDKKVANMDSCRILVLDEADKLLSQDFKGMLDHVISRLPQERQILLYSATFPLTVK
QFMEKHLKEPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQ
RVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRNGLCRNLVCSDLFTRGIDVQAVNV
VINFDFPKMAETYLHRIGRSGRFGHLGIAINLITFDDRFALHRIEQELGTEIKPIPKVID
PALYVAKTLDDCHAIEEADSSK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaattgttgccaatcacgttctgggaggcatgaacatgaataatcagaaagtg
gaccttgatgatggaattggctggaaatccaaattgaagatcccgccaaaggatcagaga
atcaaaactagtgatgtcacagatactcgtggaaatgagtttgaagagttctgcttaaag
cgggaacttctaatgggcatatttgagaagggctgggaaaaaccgtcgccaattcaggaa
gctagcattcctattgctctgtcaggcaaagatgtgttagctcgtgccaagaacggtaca
ggaaagactggagcttactccattccggttcttgagcaggttgaccccaagaaagattgc
atacaagccctggtcattgtgccgacacgagaattggcactccaaactagtcaaatttgc
attgagcttgctaagcatatggatgtcaaagtcatggttactacaggtggaacaaattta
cgtgatgatatcatgagaatctaccaaaaagttcatgtcattattgccacacctggaaga
attttggacctcatggacaagaaagtagcaaacatggatagttgcagaattctagtccta
gatgaggcagacaaactgctgtcacaagacttcaaaggaatgttggatcatgtgatctca
cggttaccccaagagcgacagatcttgctgtactctgctactttcccacttacagtcaag
caattcatggaaaaacatttaaaagagccttatgaaattaacttgatggaggagcttaca
ctgaaaggtgttacacagtactatgcatttgttcaggagcggcagaaggttcattgcttg
aataccttgttttccaagctccaaatcaatcaaagcattatcttctgcaattcaacccaa
cgagtggagctcctagctaagaaaataactgaactgggatactgctgctattatattcat
gccaagatggcccaggcccaccgaaacagagtattccacgacttcaggaatgggctgtgc
aggaaccttgtgtgctcagatctcttcacaagaggtatcgatgttcaagctgtgaatgtt
gtgatcaacttcgatttccccaagatggcagaaacttaccttcaccgtattggtcgttca
ggacggttcggccaccttggtattgccataaatctcatcacttttgatgacagattcgct
cttcaccgcattgagcaagaactgggcacagagattaagcctattcctaaggtcatcgac
ccagccttgtatgtggctaagactcttgatgattgtcatgccattgaagaagctgactcg
agcaaataa
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