Thrips palmi (melon thrips): 117651758
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Entry
117651758 CDS
T08251
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03013
Nucleocytoplasmic transport
tpal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117651758
03015 mRNA surveillance pathway
117651758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117651758
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117651758
mRNA cycle factors
P-body specific factors
117651758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
B0403_3
Motif
Other DBs
NCBI-GeneID:
117651758
NCBI-ProteinID:
XP_034251965
UniProt:
A0A6P9A3D7
LinkDB
All DBs
Position
Unknown
AA seq
1256 aa
AA seq
DB search
MGDTGGGLNMPSTPIAPVEGSYEWLAKIVFKDDDVLSLVTSPKSTSTTSGSLPRECNPSC
EEVPTQESVSSETDATTDSLSKEQIQAHSDAKETCLADDAQKTAADHLLHEMDVRLEFKA
QLRLVNQRAANSRPDERHFATLDSNLKRNSGFVRKLRNFTNAQLEGLVRDMSTLNLSKYL
SEAASAIVEAKLKVTDVGAAVVMCSLLHQTYADFAPLLLENWQKVLSLKKDEKVANPSKL
RVDLRLYGDLVSVSLFPLPKALTLLGQILSSLINADKEDHNNASVILSFCKHCGEDYAGL
IPTSVKNAATLVGKEVPRSTLLLPEKQKAVRTLLSDYFSSLCKHLLKDHRELQALERQNR
RILQTKGELNAERKERLENLQQQYQKLLNSAQSFADVLDQPMPKLPEDPIKCEEESGLIV
SGIGGFGDGEDGMFSGSSGLVGGLWEDEETQRFYEDFPNMRDYLPGIKSRDREPGSSPSP
TPVSQVTEEVLDAELREEDLGNPDNVEPANVEDEPEESEPASQATTSTKQHLDQFLNQLP
NCVNRELIDNAAAEFLLSLNAKSNKRKLVRVLFGVPRTRLDLLPFYARLVATLHPVVPEV
AQDLCHMLKQDFMYHVCKKDQINIESKIKVVRFIGELVKFKMYSLIEGLFCLKVLLHDFT
HHHVDMTCALLETCGRYFLRKPDSHQRTKIYLEQMMRKKSALAMDIRYVTMIENAFFFVN
PPEGGPLRVKERPPLHSFIRKILYQDLSKPTTDKVFRLIRRLDWEDKDLASYTIKCLTAA
WNVKYYNIRCLASLVAGLAVHQESVAPMVVDGVLEDIRVCMEINHVKLNQRRVAMVKYLG
ELYNYRVVESNDIFKVLYSLIKFGVSHDAANPSLLDPPDHLFRIRLVSTLLFTCGQFFNS
GPSKQKLDYFIVFFQHYYWMKKESGYWASGDTVGALTGAGDGPSPFPMSIEYMFEDALLG
LRPNLVLAKTLEEAVTAVNELETKLVAQLPKSVSAPGDGADLGTITEDSERETDGEKDGT
DDTSSMDEMEEDNGADTADDDEFDNMLDEDEDDNENDDDEDEEMSDSFMTNDEGDVVRIK
RKEQEEISHEDKEFLEELEQMVSCSIQDHARSTTKPRHMHISIPLHIRTNHKKTYEQLQE
ANENVSVEQNTMNFTLLTRRGNKQAFRNLSVPVSSELALNLRSQEQVQKAERMEMERVKR
LTLDINERLEEEDYQDMLASIQRPATVNLNRERRNRYQHPKGAPDADLIFGPKRTR
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgggggatacaggaggagggctcaatatgccatcaacacctatagctcctgttgaaggg
tcctatgaatggcttgccaaaatagttttcaaggatgatgatgtgctttcattggtcaca
tctccaaagtctacttcaactacaagtggaagcttaccgcgagaatgcaatccatcttgt
gaggaggtgccaacccaagaaagtgtgtcttctgaaacagatgcaactactgactcctta
tctaaggaacaaattcaagcccacagtgatgctaaagaaacctgcctagctgatgacgct
caaaagactgcagcagaccatttactccacgagatggatgtaaggcttgaatttaaggct
caattaagacttgtcaatcaacgtgctgccaattctcgacctgatgaacgtcattttgca
acactagattctaatctgaaaaggaactcaggctttgtgaggaaacttcgtaacttcact
aatgctcaacttgaaggattggtccgagatatgtccactctgaatctctcaaaatactta
agtgaggcagcatcagccattgtggaagccaagcttaaggtcacagatgttggagctgcc
gttgttatgtgtagtttgctgcatcaaacatatgctgattttgcaccacttttgctcgaa
aattggcaaaaagtcctttcactgaaaaaagatgaaaaggttgccaacccctctaaacta
cgtgttgacctccgattatatggagaccttgtgagtgtcagcctttttcctcttccaaag
gctctcaccctgttaggacagatcctatcttctttaattaatgctgataaagaggaccac
aacaatgccagtgtcatactgagcttttgcaagcattgtggagaggattatgcaggcttg
attcccacaagtgtgaaaaatgccgcaacattagtgggaaaggaggttcctcgtagtact
ctcctattacctgaaaagcaaaaagctgttcgcactcttctcagcgattatttctcctct
ttgtgcaagcatctcttgaaagaccacagggaacttcaggcacttgaacgacaaaataga
cgtatcctccaaaccaaaggtgaactcaatgctgagcgaaaagaacgcttggaaaatctt
cagcaacaatatcaaaagcttttgaattcagctcaatcatttgctgatgtattggaccag
cctatgcccaaactgccagaggatcctatcaaatgtgaagaagaatcaggattgattgtt
agtggaataggtggttttggtgatggagaggatggaatgttctctggatcatctggactg
gtgggtgggctgtgggaagatgaagagacacaaaggttttatgaagatttccctaacatg
agagattacctgccagggatcaaatctcgtgacagagaaccaggatcttcaccatcacca
actccagtcagccaggtgacagaggaggttttggatgctgagctcagagaggaagatcta
gggaatcctgacaatgtagaaccagcaaatgtggaagatgaaccagaggaatcagaacct
gcaagccaagccaccacttccaccaaacagcacttagaccaatttttaaatcaactccct
aattgtgttaatcgggaattaattgacaacgcagctgctgagtttctattatctcttaat
gctaaaagcaataaacgaaaacttgtgagagtgctattcggggtaccaagaacaaggttg
gatctgctaccattttatgctcgcttggttgccacgttacaccctgtagtccctgaagtt
gcacaagacctttgtcacatgctcaagcaagactttatgtatcatgtgtgcaaaaaggat
caaatcaatattgaaagtaaaatcaaagttgtacgtttcattggagagctagtaaaattc
aaaatgtactctctgatagagggtttgttttgcctaaaagttctcctgcatgatttcact
caccaccatgttgacatgacatgtgctcttcttgaaacatgtggccgatactttttgcgc
aaaccagactcacatcaacgcacgaaaatctatttagagcaaatgatgcgcaagaagtca
gccctagcaatggatataagatatgtcactatgatagagaatgcatttttctttgtcaac
ccacctgagggtggacctttgagagttaaagagcggcctccccttcactcttttataaga
aagattctatatcaagatctgagcaaaccaacaactgacaaggtatttagactgatcaga
cggcttgattgggaggacaaagacttggcatcatacactattaaatgccttactgctgca
tggaatgttaaatattacaacatcagatgccttgcaagtcttgttgctggcttagctgtt
catcaggaaagtgtagcacctatggttgttgatggtgttctggaggatattagagtttgt
atggaaattaatcatgtcaaactgaatcaaagaagagttgctatggtaaaataccttgga
gaactttataattatcgtgttgtagaaagcaatgatatttttaaggtattatactcttta
atcaagtttggagtgtcccatgatgctgcaaacccctctcttctggatcctcccgatcat
ttatttagaatacgattagtgagcaccttgttgttcacatgtggtcagttcttcaacagt
ggacccagcaagcagaaattagactatttcattgtgtttttccagcattattactggatg
aagaaagaaagtggttactgggcctcaggagatactgtgggtgccctcactggtgcaggg
gacggaccttctcccttcccaatgtccattgagtacatgtttgaagatgcattattgggc
ttgaggcctaatttggtacttgccaaaactttagaagaagctgtaacagcagttaatgag
ttagagacaaaacttgtagcccagttgcctaaatcagttagtgctccgggagatggtgca
gacctaggaactattactgaggattcggaacgagagactgatggggaaaaagatggcaca
gacgacaccagctcaatggatgaaatggaagaggacaatggggctgacacagcagatgat
gatgaatttgacaacatgcttgatgaagatgaagatgataatgaaaatgatgatgatgaa
gatgaagaaatgtctgactcattcatgacaaatgatgaaggagatgtagtgagaataaaa
cgaaaggaacaagaagaaattagccatgaagataaggaatttctggaagaacttgaacag
atggtgtcgtgtagtattcaggatcatgcccgcagtacaactaagccacggcatatgcat
atctctatcccattgcacatacgaacaaaccacaaaaaaacatatgagcaactccaagaa
gccaatgagaatgttagtgtggaacagaatactatgaacttcactcttcttactcgaagg
ggaaacaaacaagcattccggaatctttcagtacctgttagctctgagttagctttgaat
ttgcgtagccaagagcaggtacaaaaagcggaacgtatggaaatggagcgtgtcaagcga
cttaccttagatattaatgaaagattggaagaagaggattaccaggacatgcttgcatcg
attcagcgtcctgcaactgttaatctgaacagagagaggcgtaatcggtaccaacatccc
aaaggtgcacctgatgctgatctcatttttggtcctaaaagaacgaggtag
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