Thrips palmi (melon thrips): 117652802
Help
Entry
117652802 CDS
T08251
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117652802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpal03019
]
117652802
Messenger RNA biogenesis [BR:
tpal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117652802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
117652802
NCBI-ProteinID:
XP_034253802
UniProt:
A0A6P9A797
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MLTTKTFLRKTKRGNILKIVREHYLRDDIWCGSSLCKNCSLKEKDKVLDKEVISNVSSVF
SFPHYLVLDTNVVLHQIDVLEEDVLENVIILQTVLEEVKHRSSPVYRRLKDIIENPNRKF
YIFVNEHHKDTYVERKPGETANDRNDRAIRVATSWYATHLSGSQPKAKNKHVSMVLLTDD
ADNCQKAKAEGLIASTVYDYVKSLQDAPTLLDKLSKKDGVFEGGSKEPLFPLHLSPKEIQ
DGLKAGKLHQGTFLASRENFLEGSVNVEGFEKFILVQGHAGLNRAVDGDTVALELLPESD
WVAPSDIVLEDSEDDPGDILDEEVKMEKEKAKAKKVEREPTGRVVGIIRRKWRQYCGILL
PSQDKNSVRHLFVPAERKIPKIRIETRQAEKLKSQRIIVAIDAWPRTSRYPLGHFVRALG
NVGDKDTENEVLLLEHDVPHSKFSDQVLSFLPKLPWIITEEDYAKRVDLRGLTICSVDPV
GCTDIDDALHCRELENGNYEVGVHIADVSHFIRPGNALDKEAALRATTVYLVDKRIDMVP
ELLSSNLCSLRGNVERFAFSCIWEITKNAEIVNTKFHKSVICSKAALTYGEAQAKIDDKN
LNDDVAKSLRGLNSLAKILKKRRIENGALVLASPEIRFQVDSETHDPIEVVAKKMLETNS
MVEEFMLLANISVAEKIFQEFPDCAMLRRHPQPPPSNFDPLIKAGNLQGFEINVESGKQL
AESLDLALKPENPYFNTMLRIMATRCMMQAVYFASGMLQKEEFAHYGLACPIYTHFTSPI
RRYADIIVHRLLAACIGADSTYADLLDKRKSHSLCHNLNYRNRMAQYAGRASVNLHTHLF
FRNRVQDEQGYVLYVRKNALQVLIPKYGLEGTLYLAPPKGQVAKVNFTYNEEEQSQSYGS
IKFRVFDPVTVQLSLDRTNVQHEKLMLLLVKPEIPDFSVPSQAAADEAMDVDQVKDTAAP
SQPPSKRQRKSK
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgacgaaaacctttttaaggaagaccaaacgcggcaatattctgaagattgtc
cgggaacactaccttcgagatgacatctggtgtggctcgtcgctgtgcaaaaattgttct
ttgaaagaaaaagataaggttcttgataaggaagtcatcagcaacgtgagcagtgtgttc
tcatttccccattacttggtgctggacaccaatgttgttttgcatcagattgatgtttta
gaagaggatgttttagaaaatgttatcatccttcaaacagtccttgaggaagtgaaacat
cgtagctctccagtctaccgtcgcctaaaagatataatagaaaacccaaatagaaaattc
tatatttttgttaatgaacatcataaagatacatatgtcgaaagaaagccaggagagaca
gccaatgacaggaatgatcgagctattcgagttgctacctcttggtatgcgactcatcta
tctggaagtcaaccgaaggctaaaaataaacatgttagtatggtattgcttactgatgat
gcagacaactgtcaaaaagccaaagcagagggtctcatagcttccacagtttatgattat
gtaaaatcattgcaagatgcccctaccttgttggacaaactgtcaaaaaaggatggtgta
tttgaggggggttcaaaagaacccctatttcctcttcatctatctcccaaagaaatccag
gatggacttaaagcagggaaacttcatcagggaacattccttgcctctagagagaacttt
ttggaagggtcagtaaatgttgaaggttttgaaaagtttatccttgtccaaggtcatgct
ggcttgaacagggcagtggatggggacactgtggcactggagctcctgcctgagagtgac
tgggttgctcctagtgacattgtgctcgaagattctgaggatgacccaggtgatatattg
gatgaggaagttaagatggagaaggaaaaagctaaagcaaagaaagtggaaagggaacct
acaggtcgggttgttggaataatcagacgtaaatggagacagtactgtggaatcctttta
ccgagccaagataaaaatagtgttcgacacttatttgtaccagcagaaaggaaaatcccc
aaaattcgtattgaaacaagacaggcagaaaaattgaagagccaacgtataattgttgct
attgatgcttggccacgaacatcaagatatcctttgggtcattttgtcagagctcttggt
aatgttggcgataaggatactgaaaatgaagtgctcttgctggaacatgatgttcctcat
agcaaattctccgaccaagtactcagcttcctgcccaaattgccttggatcatcacagag
gaggattatgcaaagcgtgtggacctcaggggtctgaccatttgctctgttgacccggtt
ggctgtactgatattgatgacgcactgcactgcagagagctggaaaatggcaattatgag
gttggtgtgcacattgctgacgtttcccacttcattcgacccggcaatgcgcttgacaaa
gaagctgccttacgagcaacaaccgtctatctggtggacaaaaggattgacatggttcct
gagctacttagttcaaatttgtgttccctgagaggcaatgtggaacgttttgcattttca
tgcatttgggaaataacgaagaatgcagagattgtcaatacaaaatttcacaagagtgtt
atttgctctaaagctgctctaacttatggtgaggctcaggcaaagattgatgacaaaaac
ctgaatgatgatgttgctaaatctctaagaggtttgaactcgctggcaaaaatcttgaag
aagagaaggatagaaaatggagcgcttgtcttggcctcaccagaaatccgattccaagtg
gatagtgagactcatgatcccattgaagtagttgccaagaaaatgttagaaaccaattct
atggttgaagaattcatgttgttagccaatatttcagtagcggaaaagattttccaagaa
tttcctgattgtgctatgttgagaagacatccccagccaccaccttctaattttgatccc
cttatcaaagcaggcaatctccagggctttgagataaatgtggaatctggaaagcagctt
gcagaatctctggacttggcattaaaaccagagaatccatacttcaatactatgctgaga
atcatggccacacgctgcatgatgcaagctgtgtattttgctagtggtatgttgcaaaaa
gaagaatttgcccattatggactggcctgtcctatttacacacatttcacttctcctatt
cgaagatatgctgatatcatcgtccatcgattgctggctgcctgcataggagctgattca
acctatgctgaccttctagataaacgtaaaagccattccctttgtcacaatttaaattac
cgcaaccggatggctcaatatgctggtagagcctctgtaaaccttcatactcatcttttc
ttcagaaatcgagttcaagatgagcaaggatatgtcttgtatgttcgtaagaatgcactc
caagttctcattcccaaatatggcttagagggaacattatatttggcaccgccaaagggg
caggtggctaaagtaaattttacatacaatgaagaggaacaaagccaaagctatggatcc
attaagttccgtgtatttgatccagtgacagtgcaactgagtttagaccgaacaaatgtt
caacatgagaaattaatgctgctacttgtaaagccggagattccagattttagtgttccc
tctcaggctgcggctgatgaagctatggatgttgatcaagttaaggatactgcagctcct
tcacaacctccctcaaaacgtcagagaaaatctaagtaa
DBGET
integrated database retrieval system
