Thermus parvatiensis: AV541_01625
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Entry
AV541_01625 CDS
T04274
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tpar
Thermus parvatiensis
Brite
KEGG Orthology (KO) [BR:
tpar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpar03016
]
AV541_01625
Enzymes [BR:
tpar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AV541_01625
Transfer RNA biogenesis [BR:
tpar03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AV541_01625
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AMA75045
UniProt:
H7GIF9
LinkDB
All DBs
Position
284781..285377
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AA seq
198 aa
AA seq
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MRLFYAVFLPEEVRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFLGERPEEELPDYLALG
HRLARLEAPFRARLRGTGYFPNEGTPRVWFAKAEAEGFLRLAEGLRAGVEELLGEEAVRI
PGWDKPFKPHITLARRKAPAPRVPPVLFGLEWPVEGFALVRSELKPKGPVYTVLEKFSLR
GEHGRKQAQGPGERPEGD
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgaggctcttctacgcggtcttcttacccgaggaggtccgggcggccctggtggaagcc
cagaccaaggtccgcccttttcgcggctggaagcccgtccctccccaccagctccacctg
accctcctttttctgggcgagcggcccgaggaggagcttcccgactacctggccctaggc
cacaggctcgcccgcctcgaggcccccttccgggcgcggcttcgcgggacgggctacttc
cccaacgaaggaaccccccgggtctggttcgccaaggcggaggccgaaggcttcctccgc
ctcgccgaggggcttcgcgccggggtggaggagcttctgggcgaggaggcggtgaggatc
cctggctgggacaagcccttcaagccccacatcaccctggcccgcaggaaggccccggcg
ccccgggtgccccccgtcctcttcggcctggagtggccggtggagggcttcgccctggtg
cgctcggagcttaagcccaaggggccggtgtacaccgttttggagaagttttccctgaga
ggtgagcatggacgaaagcaagcgcaaggccctggagaacgccctgaaggcgattga
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