Thermus parvatiensis: AV541_01660
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Entry
AV541_01660 CDS
T04274
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpar
Thermus parvatiensis
Pathway
tpar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AV541_01660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpar03021
]
AV541_01660
03400 DNA repair and recombination proteins [BR:
tpar03400
]
AV541_01660
Enzymes [BR:
tpar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AV541_01660
Transcription machinery [BR:
tpar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AV541_01660
DNA repair and recombination proteins [BR:
tpar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AV541_01660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AMA75051
UniProt:
A0A120HT15
LinkDB
All DBs
Position
293778..298352
Genome browser
AA seq
1524 aa
AA seq
DB search
MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECAC
GKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSA
TELEQVLYFSKYIVLDPKGAVLNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVK
DGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE
VLAELPEPYLFRAEEEGVVELRELEEGAFLVLRQEDEPVATYFLPVGMTPLVVHGEIVEK
GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGAR
VEPGDRIVAAIDPEEEVIAEAEGIVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDV
LADGGKVKSEIYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLRELDLEALEKELLEE
MKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDL
NDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPL
RSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKR
MEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVL
VEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAK
PSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNTPIKVAGRETSVGRLK
YVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELI
QLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEK
KQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPL
YVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKG
GADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADI
EAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV
CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVI
ELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVE
AGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMLKYVE
VTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASF
QNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARK
EAVEAKERPAARRGVKREQPGKQA
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaggttcgtaaggttcgcatcgctttggcctccccggagaagatccgctcc
tggagctacggggaggtggagaagcccgagaccatcaactaccgcaccctcaagcccgag
cgggacggcctctttgacgagcgcatcttcggccccatcaaggactacgagtgcgcctgc
ggcaagtacaagcgccagcgctttgagggcaaggtgtgcgagcggtgcggcgtggaggtg
acgaagagcatcgtccgccgctaccgcatgggccacattgagctcgccacccccgccgcc
cacatctggttcgtcaaggacgtcccctccaagatcgggaccctcttggacctctccgcc
accgagctggagcaggtcctctacttcagcaagtacatcgtcttagaccccaagggggct
gtcctgaacggggtcccggtggaaaagcgccagctcctcaccgacgaggagtaccgggag
ctccgctacggcaagcaggagacctatcccctgccccctggggtggacgccctggtgaag
gacggggaggaggtggtgaagggccaggagcttgcccctggggtggtgagccgcctggac
ggcgtggccctctaccgcttcccccgccgcgtccgggtggagtacgtgaagaaggagcgg
gccgggctcaggcttcccctcgccgcctgggtggagaaggaggcctacaagcccggcgag
gtcctcgccgagctccccgagccctacctcttccgggccgaggaggagggcgtggtggag
cttagggagctggaggaaggggccttcctcgtcctccgccaggaggacgagcccgtggcc
acctacttcctccccgtgggcatgacgcccctcgtggtccacggggaaatcgtggagaag
ggccagcccctggccgaggccaagggccttctccgcatgccccgccaggtccgggccgcc
caggtggaggcggaggaggagggggagacggtctacctcaccctcttcctggagtggacg
gagcccaaggactaccgcgttcagccccacatgaacgtggtggtccccgagggggccagg
gtggagcccggggacaggatcgtggccgccattgaccccgaggaggaggtcatcgccgag
gccgaagggatcgtccacctccacgagcccgccagcatcctggtggtcaaggcccgggtc
tacccctttgaggacgacgtggaggtttccaccggggaccgggtggcccctggggacgtg
ctggccgatgggggtaaggtcaaaagcgagatctacggccgggtggaggtggacctggtc
cgcaacgtggtccgggtggtggagtcctacgacattgacgcccgcatgggggccgaggcc
atccagcagctccttagggagctggacctcgaggccctggaaaaagagcttctggaggag
atgaagcacccctcccgggcccggcgggccaaggcccgcaagcgcctggaggtggtgcgg
gccttcctggactcggggaaccggcccgagtggatgatcctcgaggccgtccccgtcctg
cccccggacctgcggcccatggtccaggtggacgggggccgcttcgccaccagcgacctc
aacgacctctaccggcgtctcatcaaccgcaacaaccgcctgaagaagcttttggcccag
ggtgcccccgagatcatcatccgcaacgagaagcggatgctgcaggaggcggtggacgcc
ctcctggacaacggccgccgcggcgctcccgtgaccaaccccggctccgaccggcccctc
aggagcctcaccgacatcctctccggcaagcagggccgcttccgccagaacctcctgggc
aagcgggtggactactcgggccgaagcgtgatcgtggtgggcccccagctcaagctccac
cagtgcggcctgcccaagcgcatggccctggagctcttcaagcccttcctcctcaagagg
atggaggagaagggcatcgcccccaacgtcaaggcggcgcggcgcatgctggaacgccag
cgggacatcaaggacgaggtgtgggacgccctggaggaggtgatccacggcaaggtggtc
ctccttaaccgggcccccaccctgcaccgcctgggcatccaggccttccagcccgtcttg
gtggaggggcagtccatccagctccaccccctggtgtgcgaggccttcaacgccgacttt
gacggggaccagatggcggtgcacgtgcccctttcctccttcgcccaggccgaggcccgc
atccagatgctctccgcccacaacctcctctccccagcctccggggaacccctggccaag
cccagccgggacatcatcctgggcctttactacatcacccaggtgcgcaaggagaagaag
ggggcgggcctggagttcgccacccccgaggaggccctggccgcccacgagcggggcgag
gtggccctgaacacccccatcaaggtggcgggcagggagaccagcgtgggccggctcaag
tacgtcttcgccaaccccgacgaggccctcctcgccgtggcccacggcatcgtggacctg
caggacgtggtcaccgtccgctacatgggcaagcggctggagacgagcccgggccgcatc
ctcttcgcccgcatcgtggccgaggcggtggaggacgagaaggtggcctgggaactcatc
cagctggacgtgccccaggagaagaactccctcaaggacctggtctaccaggccttcctc
cgcctggggatggagaagaccgccaggcttctggacgcccttaagtactacggcttcacc
ttctccaccacgagcggcatcaccatcggcattgacgacgccgtgatcccggaggagaag
aagcagtacctggaggaggccgaccgcaagctcctccagattgagcaggcctacgagatg
ggcttcctcaccgaccgggagcggtacgaccagatcctccagctctggaccgagaccacg
gagaaggtcacccaggcggtcttcaagaactttgaggagaactaccccttcaaccccctc
tacgtcatggcccagtccggggcccggggcaacccgcagcagatccgccagctctgcggc
atgcggggcctcatgcagaagccctcgggcgagacctttgaggtgccggtgcgctcctcc
ttccgcgagggcctcaccgtcttggagtacttcatctccagccacggggcccgtaagggt
ggggcggacaccgccctccgcaccgccgactccgggtaccttacccgcaagctcgtggac
gtgacccacgagatcgtggtgcgggaggcggactgcggcaccaccaactacatctccgtt
cccctcttccagcccgacgaggtgacccgctccttgcgcctgaggaagcgcgcggacatt
gaggcgggcctctacgggcgcgtcctggcccgggaggtggaggtcctgggggtgcgcctc
gaggagggccgctacctctccatggacgacgtccacctcctcatcaaggccgccgaggcc
ggggagatccaggaggtgcccgtccgcagccccctcacctgccagacccgctacggggtc
tgccagaagtgctacgggtacgacctctccatggcccggcccgtctccatcggcgaggcg
gtgggcatcgtggccgcccagtccatcggcgagcccggcacccagctcaccatgcgcacc
ttccacacgggcggcgtggccggggccgcggacatcacccagggtctgccccgcgtcatt
gagctctttgaggcccgccgccccaaggccaaggcggtgatctccgagattgacggcgtg
gtgcgcattgaggaaacggaggagaaactctccgttttcgtggagtccgagggcttctcc
aaggagtacaagctccccaaggaggcgcgccttctcgtcaaggacggggactacgtggag
gcgggccagcccctcacccgcggggccattgacccccaccagcttttggaggccaagggc
cccgaggcggtggagcgctacctggtggaggagatccagaaggtctaccgggcccagggc
gtgaagctgcacgacaagcacattgagatcgtggtccgccagatgctgaagtacgtggag
gtgaccgaccctggggatagccgcctcttggagggccaggtcctggagaagtgggacgtg
gaggccctgaacgagcggctcatcgccgagggcaagaccccggtggcctggaagcccctc
ctcatgggggtcacgaagagcgccctctccaccaagagctggctctccgccgccagcttc
cagaacaccacccacgtcctcaccgaggcggccatcgccgggaagaaggacgagctcatc
ggcctcaaggagaacgtcatcctgggccgcctgatcccggcgggcacgggttcggacttc
gtccgcttcacccaggtggtggaccagaagaccctgaaggccattgaggaggcccgcaag
gaggcggtggaggccaaggagcgacccgccgcccggcgcggggtcaagcgggagcagccc
ggaaagcaggcttaa
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