Thermus parvatiensis: AV541_09450
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Entry
AV541_09450 CDS
T04274
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpar
Thermus parvatiensis
Pathway
tpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV541_09450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpar03019
]
AV541_09450
03009 Ribosome biogenesis [BR:
tpar03009
]
AV541_09450
Enzymes [BR:
tpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AV541_09450
Messenger RNA biogenesis [BR:
tpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV541_09450
Ribosome biogenesis [BR:
tpar03009
]
Prokaryotic type
rRNA helicases
AV541_09450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Hera_DD
Hera_RBD
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMA76113
UniProt:
A0A0X8D9Y6
LinkDB
All DBs
Position
complement(1738039..1739577)
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AA seq
512 aa
AA seq
DB search
MEFKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA
ERLEASGERGRAPRALVLTPTRELALQVSGELAAVAPHLKVVTVYGGTGYGKQKEELLRG
ADVVVATPGRALDYLKQGVLKLSQVQIAVLDEADEMLSMGFEEEVESLLSATPSERQTLL
FSATLPSWARRLAERYMRSPVVINVVREEGVTYQEEAVPAPGDRLALLSDLLYVKAPKRA
IVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMKAFREGEVRVLVATDVAARG
LDIPEVDLVVHYRLPDKPETYQHRSGRTGRAGRGGEVVVLYGPRERRELSELEQAVGRTF
KRVNPPTPEEVLEAKWHHLLARLARVPERDYKLYLDFAGKLFAEGRVEVVAALMALLLGG
APKEKSLLTGEEGWLTFKATGPRLSLPRLVALLKEKGLEVGKIAQGEEAFYVDLRPQDLP
RLAEVQGVRLERAKRVEALPEAPARGRRPVRS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggagtttaaagactttcccctgaaggacgagatcaaggaagcccttttgcggcggggc
atcaccgcccctacccccatccaggcggcggcgttgcccttggccttggagggcaaggac
ctcatcggccaggcccgcacgggcaccggcaaaaccctggccttcgccttgcccatcgcc
gagcggttggaggccagcggtgagcggggacgggcccccagggctttggtcctcaccccc
acccgggagttggccctgcaggtttccggggagctggccgccgtggccccccacctgaag
gtggtcacggtctacgggggcacgggctatggcaagcagaaggaggagctcctccggggg
gcggacgtggtggtggccaccccgggaagggccctggactacttgaagcagggggttctg
aagctctcccaggtgcagatcgccgtcctggacgaggcggacgagatgctctccatgggc
tttgaggaggaggtggaatccctcctctccgccacgccttccgagcgccagaccctcctc
ttctccgccaccctgccctcctgggcccggaggcttgctgagcgctacatgcgttccccc
gtggtcatcaacgtggtgcgggaagagggggtcacctaccaggaggaggcggtgcccgcc
cccggggaccggctcgccctcctctccgacctcctctacgtgaaggcccccaagcgggcc
atcgtcttcacccgcaccaaggccgagaccgaggaggtggccacgggccttctccgcctg
ggccacccggcccgggccatccacggggacctctcccagacggaccgcgagcgggtcatg
aaggctttccgcgaaggggaggtgcgggtgctggtggccacggatgtggctgcccgcggc
ctggacatccccgaggtggacctggtggtgcattaccgcctgcccgacaagccggaaacc
taccagcaccgctcggggcgcacgggccgggcgggccgggggggtgaggtggtggtcctc
tacgggccccgggaaaggcgggagctttccgagctggagcaggcggtgggccgcaccttc
aagcgggtgaaccctcccaccccggaggaggtcctggaggccaagtggcaccacctcttg
gcccggctggcccgggttccggaaagggactacaagctctacctggacttcgccgggaag
ctcttcgccgagggaagggtggaggtggtggccgccctcatggcccttctcctgggtggg
gctcctaaagagaagagcctcctcacgggcgaggagggctggctcaccttcaaggccacg
gggcctaggctcagcctgccccgcctggtggctctcttgaaggagaagggcctcgaggtg
ggcaagatcgcccaaggggaggaggcgttttacgtggacctccgcccccaggaccttccc
cgcctggccgaggtgcagggggttcggctggagcgggctaagcgggtggaggccctgccc
gaggcccccgcccgcggtagacgcccagtgcgctcctga
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