Treponema pallidum subsp. pallidum Sea 81-4: TPSea814_000669
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Entry
TPSea814_000669 CDS
T03185
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tpas
Treponema pallidum subsp. pallidum Sea 81-4
Pathway
tpas03030
DNA replication
tpas03430
Mismatch repair
tpas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TPSea814_000669 (dnaE)
03430 Mismatch repair
TPSea814_000669 (dnaE)
03440 Homologous recombination
TPSea814_000669 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpas03032
]
TPSea814_000669 (dnaE)
03400 DNA repair and recombination proteins [BR:
tpas03400
]
TPSea814_000669 (dnaE)
Enzymes [BR:
tpas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TPSea814_000669 (dnaE)
DNA replication proteins [BR:
tpas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TPSea814_000669 (dnaE)
DNA repair and recombination proteins [BR:
tpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TPSea814_000669 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
GT-D-like
Motif
Other DBs
NCBI-ProteinID:
AHN67332
LinkDB
All DBs
Position
complement(731781..735293)
Genome browser
AA seq
1170 aa
AA seq
DB search
MARMSFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAE
GIKAIIGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGMYYK
PRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQD
HGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRLK
FKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKEH
YIRHLVHRGLYDRYAVVSEEIKARADYELDVIVRMDFVGYFLIVWDFITWAKEHDIPVGP
GRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFERRQEVIEYVRA
RYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPKLTFKKAYESEQL
AQMKQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLYKDSKTGKISTQFG
MDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSISDISDQDPTTFSMLAEGK
SAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFIDQYIESKRDPGKIKYPDP
CLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMGKKKLAVMQEKKKEFAERA
EKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAFLKANFPAEFMAANLSNEI
NSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYGLLGIKGLGEQVAFDVFDE
RIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVTRASLTAHLDDAMKYVARK
KAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKELMGYYISGHPLDEYRSVI
GEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNMAFGSFEDLHGSVDIVVFPVL
WEEHRAQFLPETIMGLVGTVDFSKETPAFLVDSVIDLEQLRFAQVKTILAGSEHRRVSSG
EKTPLQKRGVSQEVHIEVSSHVRAHAQFKSLYEILSAHTGGSGEVFLHMHVDDRTYVVYV
PSCKVSATEVFAQQLKGNESFVQILKECVQ
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcatgtcttttgttcatttgcatgttcactcaaattattcactgttggatgga
gcttcttcattgcagcggctagtgcgtactgcaaagtcgctgggacaagaagcgcttgcg
cttaccgaccatgggaatatgtttggtgcgttgcattttcaaaaagtttgttctgctgag
ggtatcaaagcgattatcggatgtgagctctacgtggcacccgaaagtcgctttgatcgc
agtgagcatactatcggtcgcagatactatcacctcatcgtgcttgctaagaatgagacg
ggatatcgaaatctaatggttctatcctccaaagcctatatcgagggtatgtactacaaa
ccacgtgtggatgacgagcttctggcccagcatgcagaagggctcatttgtctttcttct
tgtcttgccggacagcttccttatctgttattgcagggcagaaaaagggaggcagaagaa
cacgcgcgcaaataccgagcgctcttcggtgtagataattactttattgaggtgcaagat
catggacttgatgaagagaagaaagtagcaccgcttttgattgagcttgcatgtaggctc
ggcattccgttggtggttacaaacgacgtgcattatgcggagcaggaagactctgttgca
caagacattctgctgtgcattggaacgaagaagaatcgctccgatcccaatcggcttaaa
tttaaaacagacgagttctatttaaagtcttctgaaaaaatggctcagctgtttccccac
tatcctgaaatggtgctgaatacggtgcgcattgcacagagatgtaatgtgcggattcct
cagcctggcccgctgcttccgctctaccagattcctcatgagttttccagcaaggaacac
tatattcgccatctggtccatcgaggtttgtatgatcgctatgcagtagtgagcgaagaa
attaaggcgcgtgctgattatgaactagatgttatcgtgaggatggattttgttggctac
tttttgatcgtgtgggattttattacgtgggcaaaggagcatgatattcctgttggtccg
gggcgggggtctggagcaagttctattgttgcatatgcgttaaaaattaccgacatcgat
ccccttagatataagttgctttttgaaagatttatgaatcctgagcgtatttctatgccc
gattttgacatcgacttttgttttgagcgcagacaagaagtgattgagtatgtgcgtgcg
agatatggaaatgacaatgttgggcaaattattacgttcggaacacttaagccaaaggcg
gcgattcgtgatgtagggcgcgtgttggatattccgctttcggaagttttgatgattaca
aaactgatgcctgatgatccaaaactgacttttaaaaaagcgtatgaatctgaacaatta
gcgcaaatgaagcaggagccgcgctatgctgaattgtttcaaatagcagaaaagcttgaa
gacaccaatcgaaacactagtttgcatgcagcaggtatcgttattggtaaaacggcgctc
actgattatgtaccgctctacaaggattctaagacgggaaaaattagtacccagtttggt
atggatttaattgaagactgtggattagtgaagatggactttcttgggctaaaaacactt
acgctcatccaacggacgcagaatctcgtacgacgtaaagggggtaagtacacaacgttt
tcgatatcggatatcagtgatcaggatcctacgactttttctatgttggcggaaggaaaa
tctgctgcagtgtttcagtttgaaagtcgcggtatgcaaggcatcctcaagcgtgcaaag
cccagtaagatggaggatctaatagcgttgaatgcattgtaccgacctgggccgatggca
ttcattgatcaatatattgaatcgaaacgtgatcctgggaaaataaaataccctgatccg
tgtttggaagacatcctttcagaaacatatggggtaatagtataccaagagcaggttatg
caggtggcacagcgcattgcaggtttctcgctgggagaagcagatattctgcgccgtgcg
atgggaaagaaaaagcttgcagtgatgcaggaaaagaaaaaggagtttgctgagcgtgca
gagaaacagggttttgataaaaagcatgctgagaatatttttgaaattcttattcctttt
gcagggtatgggtttaataaaagtcacgccactgcatattcagtggttgcctatcaaact
gcatttctaaaagcaaattttcccgccgagtttatggctgcgaacctttcaaacgaaatt
aattctgcagaaaaattaccactctacatggctgaagcagaaaagatgggtctgtccatt
cagaaaccggatgtcaatgcttctgaaccttattttagtgtttgtgaagggtgcattgtg
tatgggttgttgggtattaaaggtttgggtgagcaggttgcgtttgacgtttttgatgag
cgtattcgcaacggtccttacacctcctttgtagaggtgctggatcgagttcctgcaacc
tcgttaaataaaaaaaatgccgaaataatgattaaggctggatgttttgaccggttcggg
gtaactcgcgcaagtcttacagcgcacctcgacgatgcaatgaaatatgttgcgcgaaaa
aaggcggttacaagttctagacaagcaagcctttttgacgaaacggatttaggagaatgt
tctgaatacacctttccggttatggaagaatggtcccagagggagagactccgtatagag
aaggaactgatggggtattatatttctggtcatcctcttgatgaatatcgaagtgtgata
ggagaaaaggcgacattggatttaggacatattgaaaatgctcgttctgaaaataaatac
ctgattgtgggagtgctgaatgctattcacccgtatacaactaagtcaggaaagaatatg
gcttttggctcttttgaggatctccatggctctgtagacatagttgtgtttcctgtgctg
tgggaggagcatcgcgcgcagttcttgccagaaactattatggggttggtgggaactgta
gacttttctaaagaaaccccggcgttcttggtagattctgtcattgacttggaacaatta
cggtttgctcaggttaaaactattctggctggatcggagcataggcgtgtatcgtcagga
gagaaaactccactgcagaaacgtggcgtttcgcaggaagtgcacatcgaggtgagttct
cacgttcgtgcgcatgcacagtttaaatcgttgtatgagattttgagtgcacatacagga
ggctcgggtgaagtgtttcttcacatgcatgtggatgaccgtacgtacgtggtgtacgtt
ccttcgtgtaaggtatctgccactgaggtatttgcgcagcaattaaaaggtaatgagagt
tttgtccaaattctaaaggagtgcgtgcaatga
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