Treponema pallidum subsp. pallidum Sea 81-4: TPSea814_000704
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Entry
TPSea814_000704 CDS
T03185
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpas
Treponema pallidum subsp. pallidum Sea 81-4
Pathway
tpas03410
Base excision repair
tpas03430
Mismatch repair
tpas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TPSea814_000704
03430 Mismatch repair
TPSea814_000704
03440 Homologous recombination
TPSea814_000704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpas03400
]
TPSea814_000704
DNA repair and recombination proteins [BR:
tpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TPSea814_000704
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TPSea814_000704
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TPSea814_000704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
SAF
Motif
Other DBs
NCBI-ProteinID:
AHN67364
LinkDB
All DBs
Position
complement(769743..772037)
Genome browser
AA seq
764 aa
AA seq
DB search
MVCRVWIPVRKKDWAVSLEEDGFADGKRRGTRGACVVRVAVLAGPLASGGTLSEEGLRMK
RWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYLPGPFRFHAM
SAAVDRLRLAHERKEKVLIFGDRDADGISATTLLFEALCAFGLTVCWRVPVADEPYGLSC
NAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVLVIDHHAAPETLPDAIIINAKVP
GAGYPHEFLSGCATAWKVVTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEVVD
RLSETVVPRMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRMAA
FFPQCERASLLRMKDFSRIGRARSKPMEEIESFINLFITFVQKDTQLYRGAADELQLVAI
STLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAIQRLMGKKLGTVEVGWSIVPLIN
ATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARASLETYS
NRLAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLLDP
LADLFSDYGGHAFAAGFSIPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDATQM
TRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGRTERVHVKLTLDAQVHKWPAIYW
GAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtggtgtgcagagtctggataccggtccgtaagaaagattgggcagtctctttagaggaa
gatggcttcgccgacggaaagcgtcgcggcacgcggggcgcgtgtgtggtgcgtgtggcc
gttctggcgggtcctcttgcgtcgggtggtactctctcggaggaagggctacgcatgaaa
cggtggcgtgcaaaggcacttgacgaagggcgtgtccgcgagcttaccgcgcggtatagc
tgctcggcgcttgaggcggccatccttgtgcgtcgcaaggtagtggatgctgacgcactc
ctttttcattttgagcgtgatctacgctatctgccaggaccgttccgtttccatgcgatg
agcgctgcagttgaccgtttgcgtcttgcgcatgagcggaaagaaaaggtgctcatcttt
ggtgatcgtgatgcagacggtattagcgccaccacccttctttttgaggctctctgtgca
tttggcttgacggtgtgctggcgcgtgccggttgccgatgagccctatgggctctcgtgc
aatgcagtagatgagcatgcggccgcagggggtactctcattgtgaccgttgactgcggt
atttctaatcgcgcagaaattgcgtatgcgcgtcacagaggtattgacgtactggttatt
gatcaccatgcggcccctgagacactccctgatgcaattatcattaatgcaaaagtgcca
ggtgcagggtatccgcacgagtttctctcaggctgtgcaactgcgtggaaggtggtaacg
gcgctccgtttcagtaccagcggctggtatcagcggcctgtggtgcttctacacgttcgt
ccggtgactggggcgtatacgattgaggctgtaaaaatgtgtaatatggaggtggtggac
cgtctttcggaaacggtggtcccacgtatgctcctgccatctcatacgcgtcttggtgcc
ttcctggagggtcaggaagttttcgtatgggatgagcaggtggtgcgcacgcagttggcc
aaagtgtttggtggagagtttccctggcgttttaccgatgtgcggccgcgtatggccgcg
ttttttccccaatgtgaacgcgcaagccttttaaggatgaaggacttttctcgcattggg
cgtgcgcgctcaaaaccgatggaggaaatcgaaagctttatcaatctttttataactttt
gtgcagaaagatacccagctctaccggggcgcggcggatgaattgcagcttgtggcaatt
tctacgctttctgatcttatggtgttggcgggggagaaccgtattatggtccgctacggt
ctgcaggcgatgaatgaggcgccacgtgtgggtttgcgtgagttgtttgcgatacagcgt
ctcatggggaagaagttaggaaccgtagaggtagggtggagtattgtgccgcttatcaat
gcaacggggcggttagggtgtccgcaccgtgcagtggaactgtttttaatgcgcgaagct
tcgcagcgcgcgctgcaggcacgaaaaatggtgcaattgaacgaacagcgaaaaaagtta
ggaaggagtgctcgtgcacttgttgagcctcttgcgcgtgcaagtcttgagacgtacagc
aaccgcctggcagtggtttgtagcgataagattcatcggggcgttacggggattcttgca
aactgtttgagcgaggcgctgcgcgtgccttgtgtgatcatttgtataatggcagacggg
cacgcggtaggatcgttgcgttcggcgcggggatatcacctattttcgctcttagatccc
cttgcagacttgttctctgactatggggggcatgcatttgcggcgggtttttcaattccc
tctgagcgaattccccagctattgcaccgtatggaactgtatgcggcaaccattgagttt
gctgatgaaagcgcgcaagagtgtggagaatttgatgcagaactggatgctacgcagatg
acgcgggggcttttgacccttgtcgatcgctttgagccgtacggagaaggcaatcccccg
ttgtgctttttggcgaagagattgaaaattttttctgcatcgctttttgggcgtacagaa
cgtgtgcacgtaaaattgaccttggatgcacaggtgcataaatggcccgcaatttactgg
ggagcaggggaaaagttggcacaggagtttgcagtgggggatgtagttgacgcggttttt
caagtgacgcgtaacacgtttcagggaacgtgcacaccgcagctggtcattcaagatttg
tggaggagtgagtga
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