Treponema pallidum Fribourg-Blanc: TPFB_0103
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Entry
TPFB_0103 CDS
T02651
Symbol
recQ
Name
(GenBank) ATP-dependent helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpb
Treponema pallidum Fribourg-Blanc
Pathway
tpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPFB_0103 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpb03019
]
TPFB_0103 (recQ)
03400 DNA repair and recombination proteins [BR:
tpb03400
]
TPFB_0103 (recQ)
Enzymes [BR:
tpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPFB_0103 (recQ)
Messenger RNA biogenesis [BR:
tpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TPFB_0103 (recQ)
DNA repair and recombination proteins [BR:
tpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TPFB_0103 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
T4SS-DNA_transf
Sgf11
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AGK83746
LinkDB
All DBs
Position
111793..113724
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AA seq
643 aa
AA seq
DB search
MGNTSDWVEMDGLRYVYAAQGAAPMPAPTDNPACDAHMSHDVIARTAQAVFGIRALFPWQ
RLVIANILDAAHACTHTTPFAAAGSSQTDATRVTHVDDAQPEDNFVGAMQDTRFDQDGVS
RAHQVVLLPTGAGKSLCFQVPALFLEGPTLVVYPLLSLMRDQCRRMQAVGFSVILLRGGL
NAQERAYMYAQLDRCAEAYGRMRGVTPPAHQTAEFSLADSISFDASLFSDDVSTFSKVVH
VDERLAQKRTESRRGVCIIASPEILTQPALRARVRACRVAHLVIDEAHCVSEWGDSFRPD
YVRLGELVQDLAPQVVTAFTATASQTVLARIMEVLFGGRAHVLQGTVDRPNIRYTVRTVL
CKQTALTQLVARCVRPAVIFCARRVQVERVAHHLRTCLSDTQIRFYHAGLQREEKETVER
WFHTHDSAVLVTTCAWGMGVDKPNVRTVIHVDAPLTVEAYVQEVGRAGRDGMRADAFLLW
SPRDARSIETLPHAQRVRAHVLRHFAESGRCRRAVLLESLGEQNVCAGCDVCAGTARFVC
EDVEALLQFLKKNARRFTVSSLVQHLALHQKVLSVADVHALLYYALETGRVKKNIHSCGV
MSCMLHVNDSASKSYLQESKKDGENIQLPCIFRELRAFLWPSG
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
gtgggtaatacttcagattgggtagagatggatggattgcgctatgtgtatgccgcgcag
ggtgcggcccccatgcctgctcctacggataatcctgcttgtgatgcgcacatgtcgcat
gacgtcatagcgcgtactgcccaagcagtttttggtattcgtgcgctgtttccttggcag
cgcttggtaattgctaacatactggatgcggcgcatgcgtgtacacatacaactccgttc
gctgcggcaggttcttctcaaaccgatgctacgagggtgactcatgtggatgacgcgcag
cctgaggataatttcgtcggtgccatgcaagacacacgttttgatcaggatggcgtgtca
cgcgcacatcaagtggtgctattgccgacaggtgcaggaaaatcgctgtgttttcaagta
cctgccctctttttagaggggccgacgctagtggtgtacccactgttatcgctcatgcgt
gatcagtgccgtcggatgcaggcagtgggattttcggtcatcttgttacgtggtggactg
aatgcgcaagagcgcgcgtacatgtatgcgcagttggataggtgtgctgaggcgtatggc
cggatgcgaggcgttacgcctcctgcacaccagacggcagaattttcccttgcagattcg
atctcttttgatgcgtcactcttctctgatgacgtgagtaccttctcgaaggtggtacat
gtggatgaacgtcttgctcagaaaaggacagaaagtcgaagaggtgtatgcatcatcgca
agtccagagatactcacacaacctgcgctgcgcgcacgcgtgcgtgcatgtcgcgttgcg
catttggttattgatgaagcgcactgtgtgtccgagtggggagattcgtttcgtcctgat
tacgtgcgactaggcgaattggtgcaggatcttgcgcctcaagtggtgactgcatttacg
gcgactgcaagtcaaacagtgcttgcgcgcatcatggaagtgctgtttggcggtcgtgcg
cacgtgttgcagggaacagtagatcgcccgaacattcgatacaccgtacgcacggtgctg
tgtaagcagacggcactgactcaacttgtagcgcgttgtgtgcgccctgcagttattttt
tgtgctcgtcgggtacaggtggagcgtgtagcccaccatttgcgcacgtgtctttctgac
acacagatacgtttttatcacgcagggttgcagagggaagaaaaagaaacagtggagcga
tggtttcatacccatgattctgccgttttggtaactacttgcgcgtggggaatgggagtt
gataagccgaatgtacgtacggtcattcacgtggatgcgccactgactgtggaggcgtac
gtacaggaggttggaagagcaggacgggacggaatgcgtgcagacgcatttttattgtgg
tcacctcgagatgctcgctcgatagaaacactgccgcatgcacaacgggtgcgtgcgcac
gtgttgcgccactttgctgaaagcggacgttgtcgccgcgcagttttacttgagtctttg
ggggaacagaatgtgtgtgccggatgtgatgtgtgtgcaggcactgcacgttttgtatgt
gaggatgtagaagcgctcttacagtttttgaaaaagaatgcgcgcagattcactgtatca
tcgttggtgcagcacctcgcgctacatcagaaagtgctcagtgtggcggatgtacatgcc
ttgctatattacgcgctcgaaacaggacgtgtgaaaaaaaacattcactcttgtggggtg
atgtcctgtatgttgcacgttaacgattctgcgagcaaatcgtatctgcaggaaagcaag
aaggatggcgagaacatacagttgccttgtatattccgcgagttacgcgcatttttatgg
ccgagtggttag
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