Treponema pallidum Fribourg-Blanc: TPFB_0242
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Entry
TPFB_0242 CDS
T02651
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpb
Treponema pallidum Fribourg-Blanc
Pathway
tpb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPFB_0242 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpb03021
]
TPFB_0242 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpb03400
]
TPFB_0242 (rpoC)
Enzymes [BR:
tpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPFB_0242 (rpoC)
Transcription machinery [BR:
tpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPFB_0242 (rpoC)
DNA repair and recombination proteins [BR:
tpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPFB_0242 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGK83890
LinkDB
All DBs
Position
250255..254505
Genome browser
AA seq
1416 aa
AA seq
DB search
MKDIRDFDSLQIKLASPDTIRAWSYGEVKKPETINYRTLRPEREGLFCERIFGTTKEWEC
FCGKFKSIRYRGVICDRCGVEVTHFKVRRERMGHIELATPVSHIWYYRCVPSRMGLLLDL
QVIALRSVLYYEKYIVIEPGDTDLKKNQLLTETEYNDAQERYGGGFTAGMGAEAIRTLLQ
NLDLDALVAQLREKMMEKGAKSDKRLLRRIEIVENFRVSGNKPEWMILSVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVIHRNSRLIRLMELKAPDIIIRNEKRMLQEAVDALFDNSK
RKPAIKGASNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MALELFKPFIMKKLVEKEIVSNIKKAKMLVEQESPKVFSVLDEVVKEHPVMLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCKPFNADFDGDQMAVHVPLTQAAQMECWTLMLSNRNLL
DPANGRTIVYPSQDMVLGLYYLTKERSLPEGARPRRFSSVEEVMMAAEKGVIGWQDQIQV
RYHKCDGQLVVTTAGRLVLNEEVPAEIPFVNETLDDKRIRKLIERVFKRQDSWLAVQMLD
ALKTIGYTYATFFGATLSMDDIIVPEQKVQMLEKANKEVLAIASQYRGGHITQEERYNRV
VEVWSKTSEELTSLMMETLERDKDGFNTIYMMATSGARGSRNQIRQLAGMRGLMAKPSGD
IIELPIRSNFKEGLNVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEED
CGTINGIEYRAVKSGDEIIESLAERIVGKYTLERVEHPITHELLLDVNEYIDDERAEKVE
EAGVESVKLRTVLTCESKRGVCVCCYGRNLARNKIVEIGEAVGIVAAQSIGQPGTQLTMR
TFHVGGTASSTTEENRITFKYPILVKSIEGVHVKMEDGSQLFTRRGTLFFHKTLAEYQLQ
EGDSVQVRDRARVLKDEVLYHTTDGQTVYASVSGFARIIDRTVYLVGPEQKTEIRNGSNV
VIKADEYVPPGKTVATFDPFTEPILAEQDGFVRYEDIILGSTLIEEVNTETGMVERRITT
LKTGIQLQPRVFISDESGNALGSYYLPEEARLMVEEGAQVKAGTVIVKLAKAIQKTSDIT
GGLPRVSELFEARRPKNAAVLAQISGVVSFKGLFKGKRIVVVRDHYGKEYKHLVSMSRQL
LVRDGDTVEAGERLCDGCFDPHDILAILGENALQNYLMNEIRDVYRVQGVSINDQHIGLV
VRQMLRKTEVVSVGDTRFIYGQQVDKYRFHEENRQVEAEGGQPAVARPMFQGITKAALNI
DSFISAASFQETNKVLTNAAIAGSVDDLCGLKENVIIGHLIPAGTGMRRYRQVKLFDKNK
RDLDVQMEEVIRRRKLEEEALAQAVAGMEGEPEGEA
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatatccgggattttgacagtttacagataaagcttgcctcccctgataccatt
cgggcatggtcctatggagaggtgaaaaagcctgagacaattaattaccgcacgttgcgt
cctgaacgtgaagggcttttttgtgaacgcatttttggtactacaaaggaatgggaatgc
ttttgtggaaagtttaagtcaattcggtaccggggtgttatctgcgatcggtgcggggtg
gaggtaacgcatttcaaggttcgcagggagcgcatggggcatattgagcttgcaacgcct
gtttctcatatttggtactaccgttgtgtaccaagtagaatgggtttgttactcgatcta
caggtgatcgcactgcgttctgttttgtactatgagaagtacatagttatagagccgggc
gacaccgatttaaaaaagaatcagttgctcactgaaactgagtacaatgacgcgcaggaa
cgctacggtggcggctttacggcgggaatgggagcggaggctatccgtacccttttgcaa
aaccttgaccttgacgcgcttgttgcacagttgcgtgagaagatgatggagaagggtgcg
aaaagcgacaaacgcttgctgcgtcgcatagagatcgtagaaaactttcgggtgtcggga
aataagccggaatggatgattttgagcgttatcccggtgatcccgcctgatttgcgtcct
atggtgcagctcgacggagggcgttttgctacctcagatctcaatgacctgtatcggcgt
gtgatccaccgcaatagccgtttgattcggctcatggaactgaaggcgccggatatcatc
attcggaacgaaaagcgcatgttgcaagaggcagtggacgcgctttttgataattctaag
cgcaagcccgcgattaaaggtgcgtcaaaccggccgcttaagtctatttctgacatgctc
aaggggaagcaagggcgttttcgccagaatcttttgggcaagcgggtcgactattccggg
cgttcggttatcgtagtggggcctgaacttaagttgtggcagtgcgggttgcctacaaaa
atggcgcttgagctgtttaagccctttattatgaaaaagctggttgagaaagaaattgtc
tcgaacatcaaaaaggcaaagatgctcgtggaacaagagtcgccgaaggtattttcggtg
ttggatgaagtggtaaaagagcatccagttatgcttaatcgggcgccgacattgcatcga
ttgggcattcaggcttttgagccggtgttggtggaggggaaggcgattcgtcttcatccg
cttgtgtgtaaaccttttaatgctgattttgatggggatcaaatggcggtgcatgtgccg
ctgacgcaggcggcacagatggagtgttggacgctcatgttgtcgaatcgcaatttgctt
gaccctgcaaatgggcgcacgattgtgtatccatctcaggacatggttctgggtttgtat
tatctgacaaaggaacgctctctgccggagggtgctcgtcctcgccgtttttcctcggtg
gaggaggtaatgatggctgcggaaaagggggtaatcggctggcaggatcagattcaagtg
cgatatcacaaatgtgatggtcagcttgtggtcactaccgcaggaagacttgtgttgaat
gaggaagttcccgcagagattccttttgtcaacgaaacgcttgatgacaaacgcatcagg
aaattaattgagcgggtgttcaagcgtcaggattcttggcttgcggtgcagatgctcgat
gcactgaaaactatcggttatacctacgcgaccttctttggtgcaacgctcagtatggac
gacatcatcgtgcctgagcagaaggtgcagatgctcgaaaaggcgaacaaggaagtgcta
gcgattgcgagtcaataccgcggggggcacatcacgcaagaggagcgttataatcgcgtc
gttgaggtgtggtctaaaacaagtgaggagctcacttcgctcatgatggaaacacttgag
cgcgacaaggatggatttaataccatttacatgatggctacctcaggtgcgcgcgggagt
cgcaatcaaatccgccaactggcgggaatgcgtggcttaatggcaaagccgagtggggat
atcatcgaattgcctattcgttctaattttaaagagggactcaatgtcattgagtttttt
atttctaccaacggtgcacgcaaagggctcgcagacactgcgctaaagaccgctgatgcg
gggtatttgacacgtcgtctggttgatatcgcgcaagatgtggtggtgaacgaggaggac
tgtggtaccatcaatggcattgaatatcgcgcggtgaagtccggcgatgagattattgaa
tcgcttgctgagcgcatcgtaggaaagtatacacttgaacgtgtagaacaccccatcacc
catgaactgctgctcgatgtgaacgaatacatcgacgatgagcgtgcagaaaaggtggaa
gaagcgggcgtggagtcagtgaagttgcgcaccgtgctcacgtgcgaatctaagcgagga
gtgtgtgtgtgctgctacgggcggaatcttgcacgcaacaaaattgtagaaattggggag
gcggttgggattgtagccgctcagtccattggtcagccgggtacgcagctgacaatgcgc
acgttccatgttgggggtacggcaagcagtactacggaagagaaccgcatcacgtttaag
tatcccatactggtaaagagtattgagggggtgcatgtgaaaatggaggatggctctcag
ctgttcacgcgtcgggggacgctcttttttcacaaaactctggcagagtatcagcttcaa
gagggtgacagcgtgcaggtgcgtgaccgcgcgcgggtgctaaaggatgaggttctctac
cacaccaccgatgggcagacggtgtacgcttcggtgagtggttttgcgcgtataatcgat
cgaaccgtgtacctggtagggcctgagcaaaagacggaaattcgcaatggttctaatgta
gtaatcaaggcagacgagtatgtgccgcccggaaagaccgtggctacgtttgatccgttc
actgaacctattttggcagagcaggatggctttgtgcggtacgaagatattattttgggc
tctacgctcatcgaagaggtaaatactgaaacggggatggtggagcgcaggattacgacg
ttgaaaacaggaatacagcttcaaccgcgggtattcatctctgatgagtcggggaatgcg
ctgggttcgtactacttgccagaggaagcgcgcttgatggttgaagaaggcgcgcaggtg
aaggcgggtacggtcattgtaaaactggcaaaagcaattcaaaagacatcggatattacg
ggggggctgccgcgtgtttctgaattatttgaagcgcggcgccctaagaatgcggctgtc
ttggcacagatttctggggttgtgtcgttcaaaggactgtttaagggtaagcgtattgtc
gtggtgcgtgaccattacgggaaggaatataagcacctcgtgtccatgtcgcgtcagctt
ttagtacgtgatggagatacggttgaggcaggcgaacgcttgtgtgatggttgctttgat
ccccatgatatcctggcaattctgggtgaaaatgctttgcaaaactatttgatgaatgag
atccgtgacgtgtatcgtgtgcagggtgtttcaatcaatgaccagcacattggtttagtg
gtgcggcaaatgctacgaaagacagaggttgtctcggttggggacacgcgttttatctac
gggcaacaggtggataagtaccgttttcacgaagagaaccgtcaggttgaagcggaaggg
gggcagcctgcggttgcgcgcccaatgttccagggtataacgaaggcggcgttgaacata
gactctttcatatctgcggcatctttccaagaaacgaacaaggtgctcaccaatgcggcg
attgcaggctctgttgatgacttgtgtgggttgaaggagaacgtcattatagggcactta
attcccgcaggtacggggatgcggcgttatcgtcaggtgaagctgtttgacaagaacaag
cgggatcttgatgtgcagatggaggaagttatcaggcgtagaaaacttgaagaggaggcg
cttgcccaggcagttgcaggtatggaaggggaacctgaaggcgaagcgtga
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integrated database retrieval system
