Treponema pallidum Fribourg-Blanc: TPFB_0254
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Entry
TPFB_0254 CDS
T02651
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tpb
Treponema pallidum Fribourg-Blanc
Pathway
tpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPFB_0254 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpb03021
]
TPFB_0254 (rho)
03019 Messenger RNA biogenesis [BR:
tpb03019
]
TPFB_0254 (rho)
Transcription machinery [BR:
tpb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TPFB_0254 (rho)
Messenger RNA biogenesis [BR:
tpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TPFB_0254 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ATPase_2
AAA_22
OB_RNB
AAA
AAA_16
AAA_25
Spore_III_AA
ResIII
AAA_14
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AGK83902
LinkDB
All DBs
Position
266637..268196
Genome browser
AA seq
519 aa
AA seq
DB search
MKVSVGTVVGQGELGLEEGIVGNQIVSEDSAADVGECDAYGGRKKLVIRSRSRRRVVTPK
ALEVEKRPRRALRFKQNFCPEDAETSESSADVKGRARLLIDDLTEMGMHALRDFAVQRGI
SQEDVVVMKKSDIIFHVLKNHTENGGVIFASGSLEILPDGYGFLRSPQNSYLPGSDDIYV
SPSQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVNFEEVAKVQDRVPFDSLTPLYP
REKLNLETRTEDISTRVMNLFCPIGKGQRALIVAPPRTGKTILMQKIANAITQNHPEVYL
IVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAKRLVEHRKDVVILL
DSITRLARAYNQTMPTSGKVLSGGVDSNALHKPKRFFGAARNVEEGGSLTIIATALIETG
SRMDEVIFEEFKGTGNMEINLDRRLSDRRLFPAVSIKKSGTRKEELLLTEEEMQRIWVLR
KVINPMDDAEIVELLIDKMRKTKNNEAFLRSMNTGAFSS
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttctgttggtaccgtcgtcggacaaggagagttgggtttggaagagggaatc
gtggggaatcagattgtgtctgaggatagtgccgctgacgtgggggaatgcgatgcctac
ggcgggaggaagaagctcgtcatccgctctcgctcacggagacgagtggtgacgccaaaa
gcgctggaggtggaaaaacgtccgcgaagagccctacgctttaagcaaaatttctgccca
gaagatgcggaaacaagtgagtcttccgccgacgttaagggtagggcgcgtttgctgatt
gatgatttaactgagatggggatgcatgccctgcgtgattttgcagtacagcggggtatc
tctcaagaagacgtggttgtcatgaaaaagtcagatatcatctttcacgttcttaaaaat
cacactgagaatggtggcgttatctttgcttctggctcgctggagatattgcctgacggg
tatggttttttgcgttcacctcagaacagttatttgcccggttccgatgacatctacgtc
tctccaagtcagattcgcctgtttaatctgaaaacgggcgacaccatctatgggcagatt
cgctcccctaaggagggagagcgtttctttgcaatgctccgcgtggaaacggtaaacttc
gaagaagtagcaaaggtacaggaccgtgtccctttcgacagtcttacccctttgtacccg
cgggaaaagctgaatttagaaacaagaacggaagatatctcaacgcgtgtcatgaacttg
ttctgtccgatcggaaaggggcagcgtgcgctgattgtagcgccgccgcgtacgggaaag
acgattctcatgcagaaaattgcaaatgccatcacgcaaaatcatcctgaagtttatctt
atcgtgctgctcatcgatgagcgtcctgaagaggtaaccgacatggagcgtacggttgat
gctgaagttatttcttctacgttcgatgaacaggctactcgccatgtacagattgcagag
atagtgcttgagcgcgcaaagcgattggtagagcaccggaaggacgtggtgattttgctt
gactcgattacgcgtctggcgcgtgcctataaccaaacgatgccaacttcaggtaaagtg
ttgtcggggggagtggattcaaatgctctgcacaaaccgaaacgcttctttggtgcagct
cgcaatgtggaggaaggaggaagtctgacaatcattgccactgcgcttattgaaacaggc
agtaggatggatgaggttatttttgaggagtttaaaggtacggggaatatggagataaat
ctcgatcgtcgcctttcggatcggcgcctatttcccgcggtgagtattaaaaagtctggt
acgcgtaaggaagagttgctcctgacggaggaagaaatgcagcgtatttgggtgttgcgt
aaggtaatcaatcctatggacgatgcagaaattgtggaattgttaattgataagatgcgt
aaaacaaagaacaacgaggcatttttgaggtctatgaatacgggtgcgttctcctcctga
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